Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq39 102 7e-17 seq9 89.7 4e-13 seq5 89.7 4e-13 >seq39 Length=123855249 Score = 102 bits (112), Expect = 7e-17 Identities = 133/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||||||||| | || || ||||||||||| ||||| | || ||||| | || Sbjct 94436453 TCTTCAATATAAGTGACAATGAGGAGGCTATACATCTCAGAGTTGATGTTTTCCACGACA 94436394 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || ||||| || || || |||||| | | |||||||| | ||| | || Sbjct 94436393 ATTTGGAATCCATAGAAACAGAGGGCTTCTATAATCTGAACTTCTTGGATAAACCACTCC 94436334 Query 4932 ACTAAGTT-TTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 || ||||| | | |||||||| || ||||| || |||| || ||||||| ||| | ||| Sbjct 94436333 ACCAAGTTATCCTTTTACTATGCCATCACTTGCCACAAAGAAAGCCAAAATATGGGGTAT 94436274 Query 4991 AAA 4993 ||| Sbjct 94436273 AAA 94436271 >seq9 Length=64259867 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || |||||||| | || ||||| | || | || || Sbjct 7103039 TCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGGCCCCGTTTCTTG 7102980 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| || ||||| ||||| ||||| || Sbjct 7102979 AGCCAGAATATTGACGCAAAAGAACCCGAAAAGAAGATTCCTTCCACGGCAGCAAAGGCC 7102920 Query 4692 AC 4693 || Sbjct 7102919 AC 7102918 >seq5 Length=63240551 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| || || || || ||||||||||||||||| || || | Sbjct 3825109 AAAATCTT---ACCAAATTTTCATTCACGATTCCATCACTGGCTGCAAAAAAGGCTAATA 3825165 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 3825166 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3825225 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 3825226 ATAAGTCAAC 3825235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||| || || | ||||| || || |||||||||||||| |||||||| ||||| ||||| Sbjct 3797998 TTGATACTCTGCAACTCGTTTCTCAAAGAAATTAGTTTTCCCTTCTAAAGAAATGTTTTC 3798057 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 3798058 CATAAAATCAAAGGGATT 3798075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045420652399