Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq36 161 1e-34 seq38 122 1e-22 >seq36 Length=80974255 Score = 161 bits (178), Expect = 1e-34 Identities = 208/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| ||||| | |||| |||||||| || | || | |||| ||| Sbjct 19669707 AATGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATTGAGGCAGTGTTGATGATT 19669766 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || || || ||||| || |||||||| ||||||||||| | || || |||||| Sbjct 19669767 TTAAAGCCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAGTCAGGTGAACAGATGGGA 19669826 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || |||| || | ||| ||||||| ||| Sbjct 19669827 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATTTCTACCATGGTCTCACCAAAG 19669886 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 ||||| | ||||| |||||||| ||||||| | | |||||||||| || || | Sbjct 19669887 ATGGCATCTGGACGAGGCTTTTCTACCAAGAGGGCAGGATACAGCTCCATGGCATCAATA 19669946 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 || || ||||||||| | | ||||| || ||||| |||||||| Sbjct 19669947 TCACCATAAAGGGCCTCCAACCCCGCAGCCATTTCCTTCTCTCCTGT 19669993 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 9648 TTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAA 9707 ||||||||||||| |||| |||||| ||||| || || |||||| ||| ||| | | Sbjct 19672211 TTCTTACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGA 19672270 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 |||| || || || || || ||| |||| || |||||||| | |||||||| ||||||| Sbjct 19672271 AAAATTGATGGGTAAAGTGCTGGGCAAAGAATGCAAACATCATATTGGTGCCTTGGGGAT 19672330 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCT 9827 | ||| |||| | || || |||||| |||||||||| | | | ||| || |||| Sbjct 19672331 CAGGAATGAACTTTCTTCGCAGAAGAAACTTTTCCACAATCTCTTTTGAATCAGGAAGCT 19672390 Query 9828 TTGTTTTACCTGGTGAACGAGAA 9850 | | || |||| ||| ||||| Sbjct 19672391 CTTTCTTGCCTGAAGAATGAGAA 19672413 >seq38 Length=61073796 Score = 122 bits (134), Expect = 1e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || ||||| ||||| |||||||||||| | || | Sbjct 60195848 TCTTGACCATATTGAAGCCCATCTCACCACCGAATGTGCTCGGCTTCCAGTACTCTGGAG 60195907 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | |||||| || |||||||| |||||||| | || | || | Sbjct 60195908 AACAGATGGGATTCCCTAGGAGGCCCTTAAGGGAGAAGGGAGCCCCAATTTCTATCATAC 60195967 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| |||| | | || | ||| | |||| Sbjct 60195968 TCTCTCCAAAGATGGAGTTTGGATGGCACTTCTCCAGAAGCAGCCCCGGGTAGAATTCCA 60196027 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | |||||| || || || | ||||| || |||||||| || |||| Sbjct 60196028 AGGCATCAATGTCTCCATACAGCTCCTCCAACTCGGCTGCCATCTCCTTCTCCCCTG 60196084 Score = 86.0 bits (94), Expect = 9e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || || | |||||| || | |||||||| |||||||| |||| ||| || || || Sbjct 60203389 CCAATGAGGATGAGGCGGGCCGTCTGGAAGAGTTGCTCATCACCCCAAGTGGGGTGCTCA 60203448 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | || ||||| | ||||| || | ||||||| ||||| || | |||| Sbjct 60203449 GCCTTCAGCAGGTCACACACACGATTGTGCTCACGCAGCCAGAGCGTGGCATAGAGCATG 60203508 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| | ||| ||||| |||| || || || |||| Sbjct 60203509 AGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 60203548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716869604349120