Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq34 158 3e-33 seq1 143 6e-29 seq33 140 8e-28 seq19 140 8e-28 seq14 123 6e-23 seq39 93.3 1e-13 seq7 87.8 4e-12 >seq34 Length=88915096 Score = 158 bits (174), Expect = 3e-33 Identities = 168/219 (77%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || ||||||||||| || || || || || |||||||| |||| Sbjct 47887680 AGGTCAAAATGC---AGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTGGAGG 47887736 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||||||| ||||| || ||||| ||||| ||||| || || Sbjct 47887737 TGG--AGCCCAGTGACACCATCGAAAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCAT 47887794 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 47887795 CCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCT 47887854 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCT 178126 | | ||||| ||| |||| ||||| ||||| || || || Sbjct 47887855 TTCTGATTACAACATCCAGAAAGAGTCAACTCTCCACCT 47887893 >seq1 Length=122647182 Score = 143 bits (158), Expect = 6e-29 Identities = 158/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 14843941 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 14843884 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 14843883 ACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCTGACCAGC 14843824 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| ||||||||| | || || |||| || ||| Sbjct 14843823 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 14843764 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || ||||| |||| Sbjct 14843763 TCCAGAAGGAGTCCACTCTGCA-CTTG 14843738 >seq33 Length=88276357 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || | || || || || || || || |||||||| || || | Sbjct 13710782 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATTACTCTGGAGGTGGA--GCCCAATG 13710839 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| ||||| ||||| || ||||||| Sbjct 13710840 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 13710899 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||| | |||||||| |||||||| | || || |||| || ||| Sbjct 13710900 AGAGGTTGATCTTTGCCAGCAAACAGCTGGAAGATGGGTGCACCCTGTCCGACTACAACA 13710959 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || ||||| ||||| || || Sbjct 13710960 TCCAGAAGGAGTCAACTCTGCACCTGGT 13710987 Score = 131 bits (144), Expect = 4e-25 Identities = 156/207 (75%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || ||||| || |||||||| || ||| Sbjct 13711011 CAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 13711068 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 13711069 ACACCATCGAGAATGTCAAAGGGAAGATCCAAGAAAAAGAGGGCATCCC-CCTGACCAGC 13711127 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 13711128 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTACCCGACTACAACA 13711187 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 13711188 TCCAGAAGGAATCCACTCTGCA-CTTG 13711213 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||| ||||||| || || | || || |||| ||| |||||||| ||| Sbjct 11743191 CAGATCTTCATGAAAACCCTGACTGTCAAGACCATCATCCTGGAGGTGGAGCCTAGAGAT 11743132 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| ||||| ||||| || ||||| || || | || Sbjct 11743131 ACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCACCTGAAAAACAG 11743072 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| | ||| || |||||| | ||| | ||| || Sbjct 11743071 AGGCTCATCTTTGCAGGCAAGCAGCTGGGAGAGGGCCACACTCTTTCTGATAACAACATC 11743012 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| ||||| || ||| Sbjct 11743011 CAGAAAGAGTCAACTCTCCAT 11742991 >seq19 Length=38964370 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || ||||| || |||||||| || ||| Sbjct 5007179 CAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 5007236 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 5007237 ACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGC 5007296 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 5007297 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 5007356 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 5007357 TCCAGAAGGAGTCCACTCTGCACCTGGT 5007384 >seq14 Length=50855280 Score = 123 bits (136), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || | || || |||| ||| |||||||| || || | Sbjct 29349114 CAGATCTTCGTGAAGACCCTGACCAGCAAGACCATCATCCTGGAGGTGGA--GCCCAATG 29349171 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| || || || ||||| ||||| ||||| || ||||| || ||||||| Sbjct 29349172 ACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAGC 29349231 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| |||||| | ||| | ||| Sbjct 29349232 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGATGACAACA 29349291 Query 178102 TCCAAAAAGAATCAACACT 178120 |||| ||||| ||||| || Sbjct 29349292 TCCAGAAAGAGTCAACTCT 29349310 >seq39 Length=123855249 Score = 93.3 bits (102), Expect = 1e-13 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||| ||| || |||||||||||||| || ||||| |||| || || || || || Sbjct 84731942 AAGATTCTGGATAAGGAAGGAATCCCTCCTGATCAGCAGAGACTGATATTTGCTGGCAAG 84732001 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || || || ||||| | ||| ||||| || || ||| | ||||| || || || | || Sbjct 84732002 CAACTGGAGGATGGCCGTACT-TTGCCTGACTACAACATTCAAAAGGAGTCCACTCCTCA 84732060 Query 178124 TCTTGTTTTGAGACT 178138 |||||| |||||||| Sbjct 84732061 TCTTGTGTTGAGACT 84732075 >seq7 Length=64190696 Score = 87.8 bits (96), Expect = 4e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || ||||||| | ||||| |||||||| ||| ||| || Sbjct 6646929 CAGATTTTCGTGAAAACCCTTACAGGAACGAGCATCACTCTCGAGGTTGAATCCTCGGAT 6646988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||| | || ||||| | ||| || |||| || ||||| || || || Sbjct 6646989 ACAATAGAAAACCTAAAGGCCAAGATCCGGGATAAGGAAGCAAATCCTCC-GATCAACAG 6647047 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAA 178080 ||| |||||| || | || || || |||||||||| Sbjct 6647048 AGACAGATCTTCACCAGCAAGCAACT-GAAGATGGAA 6647083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203718815486782