Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lycaon_20pictus_20[genbank_20GCA_5F001887905.1_202016-12-01] 803 sequences; 2,358,143,818 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq19 147 2e-30 seq33 127 2e-24 seq1 118 1e-21 seq34 98.7 9e-16 >seq19 Length=38964370 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| | || || Sbjct 5007384 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 5007325 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||||||| || |||| | ||| ||||| | ||| | || |||||||||| | Sbjct 5007324 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 5007265 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||||| || || || ||| Sbjct 5007264 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTA 5007205 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| ||||| ||||| |||||||| Sbjct 5007204 CCCGTCAAGGTCTTCACGAAGATCTGCAT 5007176 >seq33 Length=88276357 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| |||||||| ||||||| | | || || Sbjct 13710987 ACCAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCACCCATCTTCC 13710928 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||| ||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 13710927 AGCTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 13710868 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||| | | | ||||| | | ||||||||||| || || || ||| Sbjct 13710867 ATCTTTGCCTTGACATTCTCGATGGTGTCATTGGGCTCCACCTCCAGAGTAATGGTCTTA 13710808 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||| ||||||||| Sbjct 13710807 CCAGTCAAGGTCTTCACGAAGATCTGCATG 13710778 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| |||||||| ||||| ||||||| ||||||||| | || || Sbjct 13711215 ACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGGTAGGGTGCGCCCATCTTCC 13711156 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||||||| || |||| | ||| ||||| | |||| || ||| || || | Sbjct 13711155 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAT-GCCCTCTTTTTCTTGG 13711097 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || || | | | ||||| || | ||||||||||| || || || ||| Sbjct 13711096 ATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTA 13711037 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 13711036 CCAGTCAAGGTCTTCACAAAGATCTGCAT 13711008 >seq1 Length=122647182 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||||||||| ||||| |||||||| |||||||| | || || Sbjct 14843736 ACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 14843795 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||||||| || |||| | ||| ||||| | ||| | || ||| || || | Sbjct 14843796 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCTTTTTCTTGG 14843855 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || || | | | ||||| || | ||||||||||| || || || ||| Sbjct 14843856 ATCTTCCCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 14843915 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| ||||| ||||| ||||||||| Sbjct 14843916 CCAGTCAAGGTCTTCACGAAGATCTGCATG 14843945 >seq34 Length=88915096 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||| ||||| || || || || ||||| | || || ||||||||||| || || Sbjct 47887879 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 47887820 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || | ||| ||||| | ||| | || ||| || ||| ||| || |||| ||| Sbjct 47887819 GATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC-ACGT 47887761 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| || | ||||||||||| || || || || || ||||| || || | Sbjct 47887760 TTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTTTTCA 47887701 Query 41850 CGAAAATCTGCATGTT 41865 |||| |||||||| || Sbjct 47887700 CGAAGATCTGCATTTT 47887685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299359623600