Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4223 214 2e-50 seq1414 111 2e-19 seq1865 98.7 1e-15 >seq4223 Length=550205 Score = 214 bits (236), Expect = 2e-50 Identities = 574/867 (66%), Gaps = 18/867 (2%) Strand=Plus/Minus Query 15906 CCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATA 15965 |||| || | ||| | || || | || || ||||||||||| || | || | || | Sbjct 266949 CCATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGA 266890 Query 15966 TATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCG 16025 || | |||||||| ||||| ||||| || ||| | ||| | |||| ||| Sbjct 266889 TAGTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCA 266830 Query 16026 TAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTA 16085 | | ||| ||||| |||||||| ||||| || ||||||| ||||| | || Sbjct 266829 GCATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAG 266770 Query 16086 TAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAA 16145 | || ||| || | || | ||| | |||| ||||||||| ||| | | | | Sbjct 266769 TGAGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGA 266710 Query 16146 TGATATCGGTGGCTC-GTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACAC 16204 |||| || | ||| || | || | ||| | || |||||||| ||||| || || Sbjct 266709 TGATTTCTTTCACTCTCTGCTCCA-AAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAG 266651 Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || ||||| || |||| ||| |||||||| |||||||| |||||||| || | || Sbjct 266650 GCAAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCA 266591 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 |||| |||| ||||||| | |||||||||| ||||| || || |||| || Sbjct 266590 GGCACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACC-----AGAAGATT 266536 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || || || | ||||| || | | ||||| | | ||||| ||||| | | |||| Sbjct 266535 CCTTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATC 266476 Query 16385 CATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AA 16442 || | |||| || || || | |||| |||| |||| | || ||||| || | Sbjct 266475 CAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAG 266416 Query 16443 ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTT 16502 | || || |||| | || || | || || || ||||| || | ||| ||||||| Sbjct 266415 AGAAATTTACTTTCTTTGGA--GTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTT 266358 Query 16503 CTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTT 16562 | || ||||||| || ||||| || || || ||||||| || || || || | || | Sbjct 266357 CAGAACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCT 266298 Query 16563 GTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAA 16622 | ||||| | ||| || ||| ||| ||| ||||| || || || ||||||| |||| Sbjct 266297 GAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAA 266238 Query 16623 AAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAAGAATATGCCAAT 16679 | || ||| || ||| | | || ||||| | || || || | || | | | ||| | Sbjct 266237 AGAAAGCCAGAACATGAGAT--ATAAAATACCTCTCCTCAAGCTCTAGGGCT-TCCCAGT 266181 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 | | | || || | | |||| || || | | ||||||| |||| | || | Sbjct 266180 GCTGAATGTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCT 266122 Query 16740 TATACATTTTCCAAATATCATTGTATT 16766 ||||||| | ||||||||||| ||||| Sbjct 266121 TATACATCTGCCAAATATCATGGTATT 266095 >seq1414 Length=619926 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| ||||| Sbjct 513483 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 513424 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 513423 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACG 513364 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 513363 CCACCACTCTTTCC 513350 >seq1865 Length=140298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGC 110711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510898702504400