Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq61401 168 1e-37 >seq61401 Length=4951 Score = 168 bits (186), Expect = 1e-37 Identities = 357/526 (68%), Gaps = 20/526 (4%) Strand=Plus/Minus Query 2258 CGGGTAGAATGAGCGCACCAACTGGAACACGCCGAGGCCGAGGCCGGTTGCGTCAATGCC 2317 ||| ||||| ||| || | |||| | || | |||||| |||||| | ||| || | Sbjct 2518 CGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGC 2459 Query 2318 GATGTATTCGACGCTGTATTTCTCGGTCAGTTTGCG---GATGCCATCTGCCTGCGCGGC 2374 |||||||| ||| || | | || || | |||| ||| | || ||||| || | Sbjct 2458 CATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTTC 2402 Query 2375 AAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATGCGGAACTTGCCACCAGAAACCAC 2434 ||||||||||| ||| || | | ||||| ||| ||||||||||| | ||| | Sbjct 2401 GAAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGC 2342 Query 2435 CGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAGTGTGTGACG---GGTCGTAGCC 2491 ||| ||||| | ||| | ||||| |||||| || | ||| |||| ||||| Sbjct 2341 CGGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC---GTATAACGCTGGGTCATAGCC 2285 Query 2492 AATCCAGACGGGGCGAGAGCCGAACGGATGGTCGGCGAACGGGGC--GAAGTCCTCCCAT 2549 | ||| || || || | |||| || || |||| ||||| |||||| |||| | Sbjct 2284 CACCCATACAGGTCGGTATGCGAAAGGGCGG--GGCGCCAGGGGCTTGAAGTCTTCCCGT 2227 Query 2550 TCTTCCATCACG--TCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGACGCTT 2607 ||| |||| || |||||||||||||||| || ||| |||||| | ||| || Sbjct 2226 AGCTCC--CACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCG 2169 Query 2608 TATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTT 2667 | ||||| | || | ||||| |||||||| | | ||||| |||| ||| | Sbjct 2168 TGTCGTCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCC 2109 Query 2668 TGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATGGTGACAA 2727 || | | | || ||||||||| |||| || || |||| ||||| || | || || | Sbjct 2108 CCAGCTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGA 2049 Query 2728 TCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCCACCGGCGAGCGC 2773 |||| |||||||| | ||| ||||| ||| |||| | |||||||| Sbjct 2048 TCTGGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGC 2003 Score = 167 bits (184), Expect = 5e-37 Identities = 268/380 (71%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 360 CGCCCATGAGCTGGAACGGTACGCGGTGCGCGTCCATCAGGTCGGCGGCGC-TGGCTTTC 418 |||| || || || ||||||||| || ||| | | ||||||| | ||| | | ||| Sbjct 3707 CGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGTCGTCT-CGCGTCACGTTC 3649 Query 419 TTGATGTTGAAAAAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCG 478 |||||||| ||||| || ||||| | | ||||||| || || | | | ||| || Sbjct 3648 TTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACACCGGGATTAGCTGAATTCCT 3589 Query 479 TCCGGTTTTCCATTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGAG-CCCTTTCGA 537 ||| ||| || || || ||||| | |||||||| || ||||| | ||||| | | Sbjct 3588 TCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGAAGTTGCCCGGTCCCTTGCTA 3529 Query 538 GTTGCGCATCGCCTCGCGCAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCGGTCAC 597 || || ||||||||||| || || ||||| | ||||||| | ||| |||| Sbjct 3528 ATTTT-CAGCGCCTCGCGCAACGCGTCTACGTCTTCCTGTTTCTGCGCTGCGTCCGTCAT 3470 Query 598 ATACATGATGTAACCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTTGC 657 |||| ||| | || || |||| | |||||| || || || || |||||||| || Sbjct 3469 GTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTAGCGACGACGAAACAGCGTCGC 3410 Query 658 GGATTCATTCAGCCAGGCGGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATCTC 717 || || |||| ||| || | | ||||||| |||||||||||||||||| || | ||| Sbjct 3409 CGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGATATTCGGGCAGGCCATACACCTC 3350 Query 718 CTGATTAATGTCGGGCTCCA 737 |||||| || ||||| |||| Sbjct 3349 CTGATTGATATCGGGTTCCA 3330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97781439840440