Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5645 102 7e-17 >seq5645 Length=125407 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||||||||||| || | | || ||||| ||||| | || ||||| | ||| Sbjct 11888 ATGGCCCTACCTCCATGCCATGCCCTTTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCC 11947 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || ||||| |||||||| || || || |||||||| || | Sbjct 11948 TGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGTGTGCCCTTCAACATCGCCAGC 12007 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 ||||| || || |||||||| | || || | ||||| || || Sbjct 12008 TATGCCCTGCTCACCTACATGATTGCACACATCACAGGCCTGAA 12051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399111221400150