Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2161 176 3e-39 seq5310 132 3e-26 seq5594 91.5 1e-13 >seq2161 Length=534239 Score = 176 bits (194), Expect = 3e-39 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 26948 GTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAA 27007 ||| |||||||| || || || |||||||| |||| ||| ||||||||||| |||| || Sbjct 520397 GTGGACAATGGGCGTGACACAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAA 520338 Query 27008 TGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGAC 27067 || | |||||| | || || | | |||| || || |||||||| ||||| ||||| Sbjct 520337 GGAGTGGGGGCAGTGCCGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGAC 520278 Query 27068 TGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTT 27127 || ||||||| || |||||| ||||| ||||| | || || ||||||| ||| ||||| Sbjct 520277 GGAATTCATGTCGTGGTCTACCTTCCCTTCAGCGCTGACGCAGCCTAAGTGGCGGCACTT 520218 Query 27128 TGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||| ||||||||||| ||||| ||| | || || ||||| Sbjct 520217 GGCCTCCCAGATCACAGAGGGGTATCTCTCTGGGTCCTCGTTGCG 520173 Score = 82.4 bits (90), Expect = 6e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 27174 TGGAGAGTCCAAGGAGACGTAGATCTATTGTAGTAGTCTGAAGCCCTTTTAGAACTAGTA 27233 |||| ||||||||| || || |||| ||| ||| ||||| | ||| | ||| | ||| Sbjct 518936 TGGAAAGTCCAAGGCGAGGTGGATCGGTTGCTGTAATCTGAGGGTCTTCTGGAATTTGTA 518877 Query 27234 TTCCAGTTACGGATGCTCAAAGTAACCATCACAGACCGTGGAAAGCTATTGTTAGCAGCT 27293 |||| |||| ||||||| ||| | ||| ||||| | | || ||| | |||| ||| | Sbjct 518876 TTCCGGTTAAGGATGCTTAAATTGACCTTCACATGCTGCGGGAAGTTCTTGTCCTCAGTT 518817 Query 27294 AA---GCATCTTGGGGTTTGTGCGCTTGTTATTTCTGACTTTACTATACAATCTATGCTC 27350 ||| | ||| | ||||| | | | |||| ||| ||| || ||| | | ||| Sbjct 518816 TTCGGGCAACCTGGTGGTTGTGGGATGGCTATTGCTGCCTTCACGATAGCCACCAGACTC 518757 Query 27351 AGCAGCAGAAG 27361 |||||||| || Sbjct 518756 AGCAGCAGCAG 518746 >seq5310 Length=121450 Score = 132 bits (146), Expect = 3e-26 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4163 CTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTG 4222 ||||||| |||||||| || || |||||||| ||||||||||||||||||| |||||||| Sbjct 24403 CTTTATAAACAGAACTGCCGCCTATTATCCAAACCATGTCTACTTTATTTGTTAATTCTG 24344 Query 4223 GCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTG 4282 | | ||| |||||||||| |||||||| | ||| | ||| | ||||| ||||| |||| Sbjct 24343 GTTCTTCAATAAGTTTTAAGGCATCATCCAGACTTTCAGCAAGAAAATCAGCTCCTTGTG 24284 Query 4283 GAAGCTCC 4290 || | ||| Sbjct 24283 GAGGTTCC 24276 Score = 107 bits (118), Expect = 1e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||||||| |||||||| || ||||| ||||| Sbjct 17708 CTTGAGTTCTCTACTGAGAACTATGTTAATTCTGTTCTTTAAAGGTCGATTCTTTTCAGG 17649 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 17648 AAGGGAGAACCATGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 17600 Score = 102 bits (112), Expect = 6e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||| | ||||| |||||||||| | || |||| |||||| |||||||| Sbjct 27315 AAGTTTATATTTCTCCAAATCAATTTCTGGAAAATATGTATCACTTTCAAAATCTTGCAT 27256 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| || ||||||||| ||| || || || | |||| ||||| || Sbjct 27255 GATCCTTGTTACAAACAGTCTAACATGGCCAGGCTTGTTCATTGCTTCCTT 27205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| ||||||||||||||||| |||||||| | ||||||||| || |||| Sbjct 34452 ATTAATTGTTCTTTTCATATACTTCAAATTTATACTTAATGCCTTTCTCTTCCTGGACAT 34393 Query 4028 TAGAAAGAACACTTGGATAT 4047 |||||||||| ||| ||| Sbjct 34392 CGGAAAGAACACCTGGGTAT 34373 >seq5594 Length=561430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 4166 TATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCT 4225 |||| |||||||| | || || | | | ||||||||||||||||||| |||||||| | Sbjct 54629 TATAAACAGAACTGCTTCTTATGAGCTAAACCATGTCTACTTTATTTGTTAATTCTGATT 54570 Query 4226 GTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAA 4285 | || |||| ||||| |||||||| | | | || || | ||||| ||||| |||||| Sbjct 54569 GCTCAATAAG-TTTAAGGCATCATCCACATTTTTGGCAAGAAAATCAGCTCCTTGTGGAG 54511 Query 4286 GCTCC 4290 | ||| Sbjct 54510 GTTCC 54506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360896030238170