Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4223 279 6e-70 seq56286 140 4e-28 seq1865 114 2e-20 seq1414 107 2e-18 >seq4223 Length=550205 Score = 279 bits (308), Expect = 6e-70 Identities = 619/921 (67%), Gaps = 17/921 (2%) Strand=Plus/Minus Query 23785 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 23840 |||| ||| |||||| |||| || | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 23841 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATA 23900 || | | ||| | ||| || | || || || || ||||| || |||| | || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 23901 TTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTT--TTAAATCCCAATTCAG 23958 | ||||| || || | ||||| || || | | ||| | |||||| | ||| Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAAC-CTTGCTAAAATCCAGCTCCAG 266829 Query 23959 AAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA 24018 | | | ||| ||||| ||||| || ||||| ||||| | |||||||| || Sbjct 266828 CA-TAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAG 266770 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 | || || ||||| | ||| | || || ||||| ||||| || || | | | | Sbjct 266769 TGAGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGA 266710 Query 24079 TAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 24138 | || | | ||| | | || ||| | | | ||||| ||||||| || | Sbjct 266709 TGATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGG 266650 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 | || || ||||||| ||| ||||| ||||| | ||| |||||||| ||||| || | Sbjct 266649 CAAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAG 266590 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 ||| || || | || || ||||| ||||| | ||||| || |||||| | ||| Sbjct 266589 GCACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTC 266535 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCC 24315 |||| || | |||||||| | | | ||||||| | | | | |||| |||| Sbjct 266534 CTTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCC 266475 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | ||||||||| |||||||| |||||||||||||| |||| || ||||| |||| Sbjct 266474 AAGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGA 266415 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 || | || |||| || || |||| || || ||||| | |||||||||||||| | Sbjct 266414 GAAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAG 266355 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 || | |||||||| ||||| ||||| || | |||||||| | || || |||||||| | Sbjct 266354 AACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAA 266295 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | ||| || || | || |||||||| ||||| || ||||| | |||||| | Sbjct 266294 CTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGA 266235 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615 | |||| ||||| ||||||||| | || || | ||| | ||| | | | Sbjct 266234 AAGCCAGAACATGAGATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAA 266175 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 | | ||||| | | |||| || || ||| |||||| || ||||| || ||||||| Sbjct 266174 TGTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACA 266116 Query 24676 TATTCCAGATGTCATGATATT 24696 | | ||| || ||||| |||| Sbjct 266115 TCTGCCAAATATCATGGTATT 266095 >seq56286 Length=35121 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | | Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 10639 CTGTTTCTTATACCATA 10655 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 18971 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 19030 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 19031 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 19090 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 19091 AGGCTCCAGGTAAAT 19105 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 29840 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 29899 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | |||||| | || || ||| |||| || | || ||| || | Sbjct 29900 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 29959 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 29960 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGAATTACTTTCAT 30005 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | | || || |||||||| || || || || || || | Sbjct 14415 CATAGGTCTCATATGGGCCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 14474 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | |||||| | || || || | || ||||| |||| Sbjct 14475 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 14534 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 53559 | | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 14535 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 14586 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||||| |||||| || |||||||| ||||||||||| | ||||| |||||| |||||| Sbjct 14836 TCTGGAACAGGATAGTAGTTAATATCAATAATTTTATTCAAGTTTCGGACAATGACTTTG 14895 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || ||| ||| ||| || ||| | | | ||| |||| |||| Sbjct 14896 GTGACGTCAGCCAATTTCTTAAAGTCATATGTGTGTTCTGGTGTGACATACATATTCAGG 14955 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| |||||||| || |||| Sbjct 14956 GCCAGGGAAGCCAAGTTACAAACAGCAACCT 14986 >seq1865 Length=140298 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 24277 C 24277 | Sbjct 110711 C 110711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 108847 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 108788 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 108787 ATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 108743 >seq1414 Length=619926 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGCC 513362 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 513361 ACCACTCTTTCCCC 513348 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 500837 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGGG 500778 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || |||||||| || ||||||| Sbjct 500777 TACTGGATTGGAAAGATGACAAATC 500753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593122905981600