Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8714 342 6e-89 seq5645 170 2e-37 seq10517 159 4e-34 >seq8714 Length=109580 Score = 342 bits (378), Expect = 6e-89 Identities = 598/860 (70%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 9501 TGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAA 9560 |||| || |||||||| | | ||| || | || ||| || ||||| || | || | Sbjct 72543 TGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCACAAAATACAAGAGGCTCCGGAT 72602 Query 9561 CCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTT 9620 | || ||||| | ||||| || ||||| || ||||||||||| ||||| || ||| | Sbjct 72603 TGTGACCAACATCTACCTGTTTAATTTGGCGATTTCTGACTTGCTCTTTCTATTCACTCT 72662 Query 9621 GCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTG 9680 ||| || ||||| |||||| | || || | |||| ||| |||||| | |||| Sbjct 72663 GCCGTTCTGGATTCACTATGT-GGCGTGGA--ATGAGTGGGTCTTTGGTCACCGCATGTG 72719 Query 9681 TAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCT 9740 ||| | ||| || | | ||| || |||||||| || |||| | ||||||||| Sbjct 72720 TAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTACAGCGAGATCTTCTTCATCATCCT 72779 Query 9741 GCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAAC 9800 ||| || ||||| |||| || || | ||| |||| || || | | |||| Sbjct 72780 GCTGACGATAGACCGGTACCTGGCCATCGTCCATGCCGTGTTCGCCCTTCGAACCCGAAC 72839 Query 9801 AGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCT 9860 |||| | |||||| | ||| | | | || ||| ||||||||| | |||| Sbjct 72840 TATAACATTTGGCATGGCAACCAGCATCTTCACATGGGGCCTGGCAGGGCTAGCAGCCCT 72899 Query 9861 CCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTA 9920 ||| |||||| |||| || | |||||| || ||| | | | |||| |||| Sbjct 72900 CCCGGAATTTATCTTCCACGAGTCCCAAGAGGATTTTGGAAAGCCTGTGTGTAGTCCTCT 72959 Query 9921 CTACCCAGAGA-TGTCTACAAATGTTTGGAGGCGCGCCCACGT--TGCAAAGGTGATTAT 9977 |||||||| | || | ||| |||| || || ||| ||| || ||| ||| Sbjct 72960 TTACCCAGAAAATGAAGA-AAACACCTGGAAGCATTTCCTCGTGCTGCGAA--TGAATAT 73016 Query 9978 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 10037 || |||| ||||||||||| |||||||||||||||||| | ||| |||| || Sbjct 73017 CTTGGGTCTTGCCCTGCCTCTGCTCGTTATGGCTGTCTGCTACTCAGGAATCATCAAAAC 73076 Query 10038 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 10097 ||| |||| | ||||| || |||||||||||||||||| ||||||| ||||||||||| Sbjct 73077 GCTGCTGAGATGTCCCAGTAAAAAGAAGTACAAGGCCATCCGGCTCATTTTTGTCATCAT 73136 Query 10098 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 10157 ||||| || ||| |||| |||||||| |||||| | |||||||| || ||| ||||| Sbjct 73137 GGTGGTCTTTTTCATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGTTTTTCA 73196 Query 10158 CGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTG 10215 | | ||||||| | | | | |||| ||||| | ||||| |||| ||||| Sbjct 73197 AACGA-CCTTCTTTGAGACAG-ACTGTGAGAAGAGCAAGCAGCTGGACCTGGCCATGCTG 73254 Query 10216 ATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTG 10275 | || | | |||||| | ||||| ||| ||||||| ||||||||||| ||||| Sbjct 73255 GTGACGGAGGTGATCGCCTACTCGCACTGCTGCGTCAACCCCGTGATCTACGCCTTCGTC 73314 Query 10276 GGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTC 10335 || |||||||| || |||||| |||||| ||| ||| | |||||||||||||| Sbjct 73315 GGTGAGAAGTTCCAAAAACACCTTCGCCACTTTTTCTACAGGCATGTGGCCATCTACCTG 73374 Query 10336 TGCAAGTACATCCCCTTCCT 10355 |||| |||||||| ||||| Sbjct 73375 GGCAAATACATCCCATTCCT 73394 Score = 342 bits (378), Expect = 6e-89 Identities = 598/860 (70%), Gaps = 13/860 (2%) Strand=Plus/Plus Query 176387 TGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAA 176446 |||| || |||||||| | | ||| || | || ||| || ||||| || | || | Sbjct 72543 TGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCACAAAATACAAGAGGCTCCGGAT 72602 Query 176447 CCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTT 176506 | || ||||| | ||||| || ||||| || ||||||||||| ||||| || ||| | Sbjct 72603 TGTGACCAACATCTACCTGTTTAATTTGGCGATTTCTGACTTGCTCTTTCTATTCACTCT 72662 Query 176507 GCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTG 176566 ||| || ||||| |||||| | || || | |||| ||| |||||| | |||| Sbjct 72663 GCCGTTCTGGATTCACTATGT-GGCGTGGA--ATGAGTGGGTCTTTGGTCACCGCATGTG 72719 Query 176567 TAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCT 176626 ||| | ||| || | | ||| || |||||||| || |||| | ||||||||| Sbjct 72720 TAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTACAGCGAGATCTTCTTCATCATCCT 72779 Query 176627 GCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAAC 176686 ||| || ||||| |||| || || | ||| |||| || || | | |||| Sbjct 72780 GCTGACGATAGACCGGTACCTGGCCATCGTCCATGCCGTGTTCGCCCTTCGAACCCGAAC 72839 Query 176687 AGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCT 176746 |||| | |||||| | ||| | | | || ||| ||||||||| | |||| Sbjct 72840 TATAACATTTGGCATGGCAACCAGCATCTTCACATGGGGCCTGGCAGGGCTAGCAGCCCT 72899 Query 176747 CCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGTGTGATCCTTA 176806 ||| |||||| |||| || | |||||| || ||| | | | |||| |||| Sbjct 72900 CCCGGAATTTATCTTCCACGAGTCCCAAGAGGATTTTGGAAAGCCTGTGTGTAGTCCTCT 72959 Query 176807 CTACCCAGAGA-TGTCTACAAATGTTTGGAGGCGCGCCCACGT--TGCAAAGGTGATTAT 176863 |||||||| | || | ||| |||| || || ||| ||| || ||| ||| Sbjct 72960 TTACCCAGAAAATGAAGA-AAACACCTGGAAGCATTTCCTCGTGCTGCGAA--TGAATAT 73016 Query 176864 GTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAG 176923 || |||| ||||||||||| |||||||||||||||||| | ||| |||| || Sbjct 73017 CTTGGGTCTTGCCCTGCCTCTGCTCGTTATGGCTGTCTGCTACTCAGGAATCATCAAAAC 73076 Query 176924 ACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCAT 176983 ||| |||| | ||||| || |||||||||||||||||| ||||||| ||||||||||| Sbjct 73077 GCTGCTGAGATGTCCCAGTAAAAAGAAGTACAAGGCCATCCGGCTCATTTTTGTCATCAT 73136 Query 176984 GGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCA 177043 ||||| || ||| |||| |||||||| |||||| | |||||||| || ||| ||||| Sbjct 73137 GGTGGTCTTTTTCATTTTCTGGACACCTTACAACCTGGTTCTCCTTCTCTCTGTTTTTCA 73196 Query 177044 CGCAACCCTTCTT--AACCTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTG 177101 | | ||||||| | | | | |||| ||||| | ||||| |||| ||||| Sbjct 73197 AACGA-CCTTCTTTGAGACAG-ACTGTGAGAAGAGCAAGCAGCTGGACCTGGCCATGCTG 73254 Query 177102 ATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTG 177161 | || | | |||||| | ||||| ||| ||||||| ||||||||||| ||||| Sbjct 73255 GTGACGGAGGTGATCGCCTACTCGCACTGCTGCGTCAACCCCGTGATCTACGCCTTCGTC 73314 Query 177162 GGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTC 177221 || |||||||| || |||||| |||||| ||| ||| | |||||||||||||| Sbjct 73315 GGTGAGAAGTTCCAAAAACACCTTCGCCACTTTTTCTACAGGCATGTGGCCATCTACCTG 73374 Query 177222 TGCAAGTACATCCCCTTCCT 177241 |||| |||||||| ||||| Sbjct 73375 GGCAAATACATCCCATTCCT 73394 >seq5645 Length=125407 Score = 170 bits (188), Expect = 2e-37 Identities = 135/162 (83%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 12048 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 11989 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||||||||| || | |||||||||||||||||| ||||| || | || Sbjct 11988 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 11929 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| ||| ||||| || || ||||||||| Sbjct 11928 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATG 11887 >seq10517 Length=228297 Score = 159 bits (176), Expect = 4e-34 Identities = 131/158 (83%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATC- 138140 ||||| | |||||||| |||||| || || ||||||||||||||||||||||| | || Sbjct 171584 CAGCGTCGCAGCCTCAGCCTGAGAGTCTTCAGCTTTTCCCCCAGGGAGTTCACGTGCTCG 171525 Query 138141 CTTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTG 138200 || | ||| | |||||||||||| ||| |||||||||| |||| |||||||||||| Sbjct 171524 CTGAT----GTCTGGGCTGTGGTTCTCAGCCAGGGGCATCACTTCCTTCAGGTAAAACTG 171469 Query 138201 GATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||| |||| ||| ||||| || |||||||||| Sbjct 171468 GATCATCTCTGACAAGGCTTGGCAACCGAGGTAACCCT 171431 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||||||| ||| | | ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 173782 TCAGTTTTCCATTCTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTC 173723 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| || ||||||| Sbjct 173722 ACTCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 173688 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| ||||||||| |||||||||||||||||||||||||| | |||||||||||||| || Sbjct 172639 CTTACTGAAGGCGGTCTTCACCTGCTCCACGGCCTTGCTCCTGTTCTCGCAGGGCAGAAA 172580 Query 138075 TC 138076 || Sbjct 172579 TC 172578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589481781306800