Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq21545 277 2e-69 seq22281 102 1e-16 >seq21545 Length=240900 Score = 277 bits (306), Expect = 2e-69 Identities = 233/286 (81%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 83050 CGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTA 83109 || ||| |||||||| |||||||||||||| | | | | ||| || ||||| ||||||| Sbjct 158711 CGCGGGCAGCAGGGCTTCGATGTCGGGCTCAATGTCGATGGTGGGGAAGCGGCGGCTGTA 158770 Query 83110 CCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTC 83169 ||||||||||||| ||||| | ||||||| ||||||||||||||||||||| ||||| Sbjct 158771 CCTGCGCACGGGCACCCCGTCCGGCCCCACCAGGAACTTCTCGAAGTTCCAGGCGACGTC 158830 Query 83170 GTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTC 83229 | |||||||||| || ||||||| ||||||| ||||||| ||| ||||| ||| Sbjct 158831 GCTGCGGCACACGGGCGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCTACGGCGTC 158890 Query 83230 GTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACC 83289 ||||| ||||| ||||||||||| || ||||||||||||||||| || || | || || Sbjct 158891 GTCGCAGGGCGCGGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCGCCCGCGCC 158950 Query 83290 GTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCG 83335 ||| ||||||||||||||||||||| ||| |||||||||||| Sbjct 158951 GTTCACCTCGCACTTCTCGAAGAGCGCGAAGCCGGGCTCGAAGCCG 158996 >seq22281 Length=54526 Score = 102 bits (112), Expect = 1e-16 Identities = 170/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 50440 GTCTATCTACAACTTCGCTGTGCGTATGCTCGTGTACATGTTTCCAGAGCTCTTTACTGC 50499 ||| ||| ||||||||| ||| |||| ||| | |||| || |||||||| || Sbjct 9404 GTCCATCGGCAACTTCGCGTCGCGCCTGCTGGTGCATCTGTTCCCCGAGCTCTTCACGCA 9345 Query 50500 GGAGAACCTGCACACGCACTTCAACTGCTACGGCTCCATGGGCAAGC-GCAGGCTCGACC 50558 |||||||||| || || | ||||||| |||||| |||||||| |||| || |||| Sbjct 9344 CGAGAACCTGCGCAAACAGTACAACTGCAGCGGCTCGCTGGGCAAGAAGCAG-CTGGACC 9286 Query 50559 CGCTACGCCTGCGCTTGCTCCGGCACTATGTGCAGTTGCTGCACCCG-GCGGCGCGCAAC 50617 | ||| | | |||| ||||| |||||| |||| |||| ||| | | ||| Sbjct 9285 CCGCGCGCATCAAGCTCATCCGCCACTACGTGCAGCTGCTCTACCCCCGCGCCAAG-AAC 9227 Query 50618 GAGCGCGTGTGGATCACAA-AGTTCCTGGCGTGCCTGGACGAGCGCTGCCGGCGCCGC 50674 || ||||| |||| ||| ||||| ||| ||||||||||||||| |||||||| Sbjct 9226 GACCGCGTCTGGA-CACTGGAGTTCGTGGGCAAACTGGACGAGCGCTGCAGGCGCCGC 9170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608182904526800