Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq61401 165 2e-36 >seq61401 Length=4951 Score = 165 bits (182), Expect = 2e-36 Identities = 423/641 (66%), Gaps = 15/641 (2%) Strand=Plus/Minus Query 1522 GGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCG 1581 ||||||||| ||| ||||||||| | || | |||| |||||| | || || | Sbjct 2517 GGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGCC 2458 Query 1582 ATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCG---GATGGATTCCGCCTGGGTGGCA 1638 |||||||| |||||| | | | |||| |||| ||| | || ||||||| | Sbjct 2457 ATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTTCG 2401 Query 1639 AAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACC 1698 ||||||||||| ||| || | | || | | || |||||||||| |||| || Sbjct 2400 AAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCC 2341 Query 1699 GGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCCACGGTGTGACG---GGTCGTAACCA 1755 || || |||| || | ||||| |||||| || | ||| |||| || || Sbjct 2340 GGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC---GTATAACGCTGGGTCATAGCCC 2284 Query 1756 ATCCATACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCT 1815 | |||||| || ||| | |||| || || || | ||| ||||||||| | Sbjct 2283 ACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGTAGC 2224 Query 1816 TCCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCG 1875 ||| || || ||||||||||| |||| || ||| |||||| | ||||||| ||||| Sbjct 2223 TCCCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCG 2164 Query 1876 TCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGC 1935 |||| || | |||||| |||||||| | | || |||| ||||| ||| | ||| Sbjct 2163 TCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGC 2104 Query 1936 TGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGT 1995 | ||| |||||||| |||| |||||| | ||||| || | || || ||||| Sbjct 2103 TCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGG 2044 Query 1996 CGCCACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATT 2055 |||||||| | ||| | || || | || | || || || || || ||||| | Sbjct 2043 CGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCAGG 1984 Query 2056 TCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGG 2115 | || | | || | | ||||| || ||||| || | || || | |||||| | Sbjct 1983 TGCA---GATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAA 1927 Query 2116 TAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGT 2156 || || || ||| || | || || |||||||||||||| Sbjct 1926 TACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGT 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107273138489700