Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4223 150 2e-31 seq25256 102 8e-17 seq14784 95.1 1e-14 seq2137 93.3 4e-14 >seq4223 Length=550205 Score = 150 bits (166), Expect = 2e-31 Identities = 391/584 (67%), Gaps = 14/584 (2%) Strand=Plus/Plus Query 116625 AATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGG 116684 |||||| || || |||| ||||| || || ||||| || || ||| | | |||| Sbjct 266095 AATACCATGATATTTGGCAGATGTATAAGAAAATGGAGGCTTCCTTTTGGGCAGCTGAGG 266154 Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCA 116742 |||||| | | || ||| ||| ||| ||||||| || || || | | ||| | | Sbjct 266155 AGGTGGTC-TCTCTAAGAACATTCAGC-ACTGGGAAGCCCTAGAGCTTGAG-GAGAGGTA 266211 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 ||| || || || ||||| || || || | || || ||||| || || || || | Sbjct 266212 TTTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTT 266271 Query 116803 GGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTC 116861 ||| ||||| ||| || || || || ||| | | || || || || ||||| | ||| | Sbjct 266272 GGTGGAGCGGTTTAGC-CAAGAAGTTCAGATTACAGAAGCCCGCTGTTTCTATGACTTCC 266330 Query 116862 AGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC 116921 | || |||||||| ||| | | || ||||||||| |||||| ||||| ||| | Sbjct 266331 AAATTGCCATGGAAAACATACGTTCTGAAATGTATAGTCTCCTCATTGACACTTACATTA 266390 Query 116922 GCTCTTCGGAGGAGAAGCTCCGTT-TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAA 116980 || | || ||| || | || || ||||| |||| |||||| || || || Sbjct 266391 AGGACTCCAAAGA-AAGTAAATTTCTCTTCAATGCCATTGAGATGATGCCTTGTGTAAAG 266449 Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 ||||||| || ||||| ||| ||||| | | || |||||| ||| || || || Sbjct 266450 AAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACAAAGAGGCTACCTGTGGAGAACGT 266509 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 |||| ||||| || |||| || || |||||| || ||| || ||||| Sbjct 266510 GTGGTAGCCTTTGCTACCGTGGAAGGAATCTTCT-----GGTTCTTTTGCATTGATATTC 266564 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||||| || ||| |||| || || || || ||| || || || ||| Sbjct 266565 TGGCTCAAGAAACAAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGA 266624 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCA 117204 || ||| | || || ||||||||||| || ||||||| || Sbjct 266625 GATATAGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA 266668 >seq25256 Length=205224 Score = 102 bits (112), Expect = 8e-17 Identities = 172/249 (69%), Gaps = 20/249 (8%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || ||||| ||||| || |||||| | || || || || Sbjct 40705 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAGCCC 40764 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | | | |||| | |||| || || | || ||||| |||||||| | || Sbjct 40765 AGCGATACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGA 40823 Query 40806 CCAGCAA--------CGAC----------TCATCTACGCGGGCAAACAGCTGGACGACGA 40847 |||||| |||| |||||| || ||||| |||||||| || | Sbjct 40824 CCAGCAGNNNCCTCCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGG 40883 Query 40848 GCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 ||||| ||| || |||||||||||||| ||| | || ||||| || ||| | || | Sbjct 40884 CCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCT 40943 Query 40908 GAGGGGCGG 40916 |||||| || Sbjct 40944 GAGGGGTGG 40952 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||| |||||||| | |||||||| | || |||| || ||||| |||||||| Sbjct 45110 GATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAG 45169 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| ||| || |||||||||||||| ||| | || ||||| || ||| | Sbjct 45170 GATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGTGCTC 45229 Query 40903 CGCTTGAGGGG 40913 || ||||||| Sbjct 45230 CGTCTGAGGGG 45240 >seq14784 Length=15745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || | || ||||||||| | || || || ||| Sbjct 8845 ATGCAGATCTTTGTGAAGACCTTGACCAGTAAGACCATCACCCTGGAGGTAGAGCCCAGT 8786 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | |||||||||||||||||| | |||||| Sbjct 8785 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 8726 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| || | | ||| || ||||||||| Sbjct 8725 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACACACTCTGTCTGACTACAAC 8666 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| | ||| || | | || | || | ||||||||||| || Sbjct 8665 ATCCAGGAAGAGTCCCCCTTTCACTTGGTCCTCCGCTTGAGGGGAGG 8619 >seq2137 Length=523945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||||||| | |||||||| | | |||| || || || |||||||| |||| Sbjct 115604 GAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGC 115545 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| || ||||||||||||||||||||| |||| ||||| || || |||| Sbjct 115544 CGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 115489 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| |||||||||||| | |||||||| | | || Sbjct 114559 AACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTGAT 114501 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || || |||||||| || | ||||| || |||||||||||||||||||| Sbjct 114500 CTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAACATCCAGAAGGA 114441 Query 40881 GGCCACGCTGCA 40892 | |||| |||| Sbjct 114440 GTCCACCTTGCA 114429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||||||| | || || || ||||||||| | || || || ||| Sbjct 116008 AATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 115949 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | || ||||||||||||||| | ||||| Sbjct 115948 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 115889 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| | | |||| || || || |||||||| || Sbjct 115888 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGA 115853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514699665839200