Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1598 87.8 3e-12 >seq1598 Length=210606 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 ||||||||||| || ||||| ||||| || |||||||| || |||||| | || ||||| Sbjct 25540 GCATTTTTTGGGGCCCAGCTGAATTCCTTCATCCATGTGATCATGTACGCATACTATGGG 25481 Query 52117 ATGGCCGCTTGTGGTCC-TATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | | || | ||| || | ||||| ||||| || ||||||||||| || || || || Sbjct 25480 TTAACTGCATTTGGCCCGTGGATTCAG-AAGTACCTTTGGTGGAAACGATACCTAACCAT 25422 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 25421 GCTGCAGCTGGT 25410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 52189 CAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCA 52248 ||||||||| | | || ||||| || || |||| | || | ||||| || || ||| Sbjct 23197 CAGTTCCATGTGACCATTGGACACACAGCACTGTCTCTCTATACTGATTGTCCCTTCCCA 23138 Query 52249 AAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGGTAAC 52308 |||||||| || ||| | | ||| |||| | || || |||||||| || ||| |||| Sbjct 23137 AAATGGATGCACTGGACTCTAATTGCCTATGCAATAAGCTTCATATTCCTCTTTCTTAAC 23078 Query 52309 TTCTATTTTAGAACATACAA 52328 |||||| || | |||||||| Sbjct 23077 TTCTATGTTCGGACATACAA 23058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922265871426800