Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4223 232 6e-56 seq1865 107 2e-18 seq1414 107 2e-18 >seq4223 Length=550205 Score = 232 bits (256), Expect = 6e-56 Identities = 480/709 (68%), Gaps = 9/709 (1%) Strand=Plus/Minus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 |||||||| |||||||| || || || |||| | || ||| | |||||||| |||||| Sbjct 266929 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 266870 Query 16019 GGATTTTTTGAAC-AATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCAC 16077 ||||||| | | || | || | |||| | |||| || | ||| || ||||| Sbjct 266869 GGATTTTCTACTCTAAAAACCTTGCTAAAATCC-AGCTCCAGCATAAGTCTGTCTGCCAC 266811 Query 16078 AAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGC 16137 |||||| |||||||| |||||||| ||| |||| || | | || || || | || Sbjct 266810 AAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGC 266751 Query 16138 TTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACT 16197 ||||| | || | | |||||| |||| | | ||||| || ||| | ||| | || Sbjct 266750 CTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACT-CTCT 266692 Query 16198 ATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATC 16256 | || || || || | |||||| ||||| | || ||||| ||||| || || | Sbjct 266691 GCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAAC 266632 Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 || || || || || | || || |||||||| ||||| |||| |||||| |||| | Sbjct 266631 CTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCT 266572 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | ||| ||||| ||||| ||||||||| | | ||||| || | ||||| | Sbjct 266571 TGAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTCCTTCCACGGTAGCAAAGG 266517 Query 16377 CAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttg 16436 | |||| || || || | || | ||| | | ||||| |||||||| || Sbjct 266516 CTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTG 266457 Query 16437 ctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGC 16496 | || | || ||||| ||| |||| || ||||| || | | | || |||||||| Sbjct 266456 CCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGG 266397 Query 16497 TATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTG 16556 || ||| ||||| || || || | |||||||||||| ||| | || || ||||| | Sbjct 266396 AGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATGG 266337 Query 16557 CTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTT 16616 | || || || |||| || || | ||||| | || || ||||| | ||||| | Sbjct 266336 CAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCT 266277 Query 16617 CTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 | | |||||||| || ||||| ||||| || | |||||| || || || Sbjct 266276 CCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 266228 >seq1865 Length=140298 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| ||||| ||||| ||||||||||| || Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || |||||||| || Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 110710 Query 16379 ACCA 16382 |||| Sbjct 110709 ACCA 110706 >seq1414 Length=619926 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || |||||||| | Sbjct 522550 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 522491 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||| | || ||||||||||||||||| |||||||| ||||| |||| Sbjct 522490 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 522431 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 522430 CCATAAAATCAAAAGGATTTTCTG 522407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462045614462000