Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq649 1728 0.0 seq12799 109 4e-19 >seq649 Length=384611 Score = 1728 bits (1916), Expect = 0.0 Identities = 1414/1718 (82%), Gaps = 56/1718 (3%) Strand=Plus/Minus Query 107080 CCAGTCCCAGCATGA-CTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAAG- 107137 ||| |||||||||| | ||||||||| || |||| || ||| || ||| |||| Sbjct 106206 CCAATCCCAGCATGTGCCGGCTGGTTTGTAGGGTCAGTTTCTAGACCTCTATCAGCAAGC 106147 Query 107138 ------------GGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCT 107185 | || |||||||| || |||| | || |||||| |||||| || | Sbjct 106146 CCAGTGTAAGAAGTTCCTAGGCAGGTGTT---TGAGAACATATGTCTAGAGAAGAAATAT 106090 Query 107186 ATCTTTACCATCACTCTGGAGTTGAACTTGATGTTCTGG-------ATT-------AGTT 107231 || ||| |||||||| ||||||||||| |||||||| | ||| |||| Sbjct 106089 AT-TTTGCCATCACTTTGGAGTTGAACATGATGTTCCTGTGAATACATTCAAAGTCAGTT 106031 Query 107232 TGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCT---TGCCTGTGCC 107288 ||||||| ||||| ||||||||||| |||||| | ||||| ||| | || ||||| Sbjct 106030 TGTAATTGAAGGCGTTTTGTTCTGTTTAAGGATTCCATCCTCGTCCTGTTTCCCGGTGCC 105971 Query 107289 CAAACTCTCCTGA-TCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCG 107347 | ||| | || |||||||| | ||||||||| || ||||| ||||||||| ||||| Sbjct 105970 CCAACCCCAGTGGGTCTCCCATTC-ATGAAGATGACTTGGTGGCGGAAGAAGCTCTGCCG 105912 Query 107348 GGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACT 107407 | | ||| ||||||||||||||||||||||||||||||||| ||||| |||||| ||| Sbjct 105911 GCGGCATTGCCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCTCTGAAACT 105852 Query 107408 TTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAG 107467 ||| ||||| || |||||| | | | |||| |||||||||||| ||||||||| | || Sbjct 105851 TTCTCTCAGATTGAAATGTAACTTTGGTTCCCTGGATCTGGAGTTCAGGGACTTTCGAAG 105792 Query 107468 TCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAA 107527 | | ||||| |||||| |||||| | |||||||||||||||||||||||||||||| Sbjct 105791 CCCACGCTGTAAGGACATCTTGTACCAGTCCCTGAAGCTGCCAGCAAAGAGATCCATCAA 105732 Query 107528 CTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCT 107587 |||||||||||||| |||||||||| |||||||||||||||||||| || |||||||| Sbjct 105731 CTGTTCTGGGATCATCCGAGGGGACCGAGAAGCAGTGGTCCAGGCCCTTCTGGACAACCT 105672 Query 107588 GGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGA 107647 ||| ||||| ||||| | |||||| | ||| |||| || ||||| || || | Sbjct 105671 GGAGAGCAAGAAGCAGCGGGAACTTCTCACAGACACAGATTATCTTAACATGACGAGCAA 105612 Query 107648 CTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCT 107707 |||||||| ||| ||||| ||||||||||||| |||||||||||||| ||||||||| | Sbjct 105611 CTGTGAGCACTTTAAGGCTGAAAGGAAGTTCATCCAGTTCCCACTGAGCAAAGAAGAGTT 105552 Query 107708 AGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCT 107767 ||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |||| Sbjct 105551 AGACTTCCCTATTGCGTACTCTATGGTGGTCCACGAGAAGATTGAAAACTTTGAAAGGCT 105492 Query 107768 GCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC 107827 ||||||||| ||||||||||| |||||||||||||| |||| ||||||| ||||||| | Sbjct 105491 GCTGCGAGCTGTGTATGCCCCCCAGAACATATACTGCATCCATGTGGATGAGAAGTCCAC 105432 Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887 ||| |||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| Sbjct 105431 AGACACTTTCAAAGAGGCAGTCAAGGCAATTATCTCATGCTTCCCAAATGTCTTCATGGC 105372 Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTG 107947 |||||||||||| | |||| ||||||||||||||||||| ||||| |||||| | ||||| Sbjct 105371 CAGTAAGTTGGTTCGGGTGATTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTAAACTG 105312 Query 107948 TATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGAC 108007 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 105311 TATGGAGGACTTACTCCAGAGCTCAGTGCCATGGAAATACTTACTGAATACATGTGGGAC 105252 Query 108008 AGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAA 108067 |||||| || |||||||||||||| ||||||||||||||||||||| ||||||| || || Sbjct 105251 AGACTTTCCTATAAAGACCAATGCAGAGATGGTCCTGGCCCTCAAGTTGTTGAATGGGAA 105192 Query 108068 GAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTA 108127 ||||||||||||||| ||||||||| |||||| ||||||| |||||||||||| | || Sbjct 105191 GAACAGTATGGAGTCAGAGGTACCTACTGAGTACAAAAAATCTCGCTGGAAATATCATTA 105132 Query 108128 TGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTT 108187 |||||||||||||||| ||| || |||||||||||||||||||||||||||| |||||| Sbjct 105131 TGAGGTGACAGACACATTGTCCCAAACCAGCAAGATGAAGGACCCTCCCCCTGGTAATTT 105072 Query 108188 ACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTT 108247 ||| ||||| ||||||||||| ||| ||||||| ||||||| |||||||||||||||||| Sbjct 105071 ACCTATGTTTACAGGGAATGCTTATATTGTGGCTTCTCGAGGCTTTGTCCAACATGTCTT 105012 Query 108248 AGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGA 108307 ||| || || ||||||||| | ||| |||||||||| ||||||||||||||||| || || Sbjct 105011 AGAGAATCCCAAATCCCAACGGCTGATTGAATGGGTAAAAGACACCTATAGCCCTGATGA 104952 Query 108308 ACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCC 108367 |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| Sbjct 104951 ACACCTCTGGGCCACCCTCCAGCGTGTTCCGTGGATGCCTGGCTCTGTTCCCTACCACCC 104892 Query 108368 CAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA 108427 |||| |||||||||||||||| ||||||| |||||||| |||||||||||| |||||| Sbjct 104891 TAAGTTTCACATCTCAGACATGGCTGCCATTGCCAGGCTGGTCAAGTGGCAGGGCCACGA 104832 Query 108428 GGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCAT 108487 ||||||| |||| |||||||| ||||||||||| |||||||||||||| | | || | | Sbjct 104831 GGGAGATCTCAGTATGGGGGCACCTTATGCACCTTGCTCTGGAATCCACCAGCGGTCTGT 104772 Query 108488 CTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAA 108547 ||| ||||| |||| ||||||||| ||||||||| |||||||||||||| ||||| || Sbjct 104771 CTGTATTTATGGGGTTGGGGACCTGAGCTGGATTCTTCAGAACCATCACCTGTTGGCCAA 104712 Query 108548 CAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCA 108607 |||||||||||| | |||||||||||| || || ||||| ||||| ||| |||||||| | Sbjct 104711 CAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTAGAGGAGCACCTACGTTA 104652 Query 108608 TAAGGCCATCTATGGGACTGAACTTTGAGCTGCA------------------CTGTGGGC 108649 |||||| |||||||||| ||||| |||| |||| ||||||| Sbjct 104651 TAAGGCTGTCTATGGGACAGAACTCTGAGATGCACTGTGACAGAATTGCTACCTGTGGGG 104592 Query 108650 CAGGGACTGTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGC 108709 |||| | ||||| |||||| ||| | | |||| |||||||||||| ||| ||||| Sbjct 104591 CAGGAAATGTGCAAACATGTCCAAGATGCGCTGGGGTGGTGTGGGGTGGGAGACCAGGGC 104532 Query 108710 TGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGC 108747 | ||||||||||||| || |||||| || || |||| Sbjct 104531 TCTGGAATCCATGGC-GGCCTCAGGGTAAGGGGCCTGC 104495 >seq12799 Length=317942 Score = 109 bits (120), Expect = 4e-19 Identities = 563/887 (63%), Gaps = 31/887 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | || Sbjct 43163 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 43222 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| ||||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 43223 ATTGAAATGTTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 43282 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | || || | | |||| ||||| Sbjct 43283 CACGTGGACAAAAAATCAGAGGATTCCTTTTTGGCTGCAGTGATTGGCATTGCATCCTGT 43342 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||| |||||||| || ||| ||||| || || || ||| | Sbjct 43343 TTCAGTAACATCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGG 43402 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||||||| | ||| | || ||| | ||||| ||||||| Sbjct 43403 GTTCAGGCTGACCTCAACTGTATGCAGGACCT-CTATAGAA-TGAGTGCAGACTGGAAGT 43460 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| ||||| | || || || || || ||||| || || ||| | Sbjct 43461 ACTTGATCAATCTTTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGA 43520 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| || | ||| | |||| | | || ||||| | || || | | Sbjct 43521 AGCTCAAGTCATTAATGGGCCAAAACAATCTAGAAACTGAGAAAATGCCATCCAAT---A 43577 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT----GACAGACACACTGTACCCTACCAGC 108158 ||||| | | |||||| | | ||| || ||| || | ||| |||| | Sbjct 43578 AAAAAGAAAGGTGGAAAAAGCATTATACAGTTGTGGACGGAAAG-CTG------ACCAAC 43630 Query 108159 AAGATGAAGGAC------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 | | || ||| | |||||| | || | || |||| | ||||||| Sbjct 43631 ACGGGGACTGACAAAATGCAACCCCCTCTCGAAACGCCTCTCTTTTCAGGCAGTGCCTAT 43690 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 ||||| | | || | | ||| |||| | | ||| ||| ||| | | Sbjct 43691 TTTGTAGTCACTAGGAAGTATGTAGGGTATGTGCTCAAGAACAAAAAAATCCAGAAGTTT 43750 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| |||||||| || ||||| || || | ||||||||||| |||| | Sbjct 43751 ATGGAGTGGGCAAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACTATTCAAAG- 43809 Query 108333 GCTCCGTGGA-TGCCTGGCTCTGT-TCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 | ||| || | | || ||||| | |||| | | | |||||| |||| || |||||| Sbjct 43810 GATCCCTGAAGTCCCAGGCTCACTGTCCTTGAG-CTCTAAGTATGACATGTCTGACATGC 43868 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 ||| || || || | ||||||||||||||| || || || | || ||| || | Sbjct 43869 ATGCGATTGCTAGATTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGCGCCC 43928 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || | |||||| ||| |||| | | | | ||||||| || || || ||| Sbjct 43929 CCTACCCCCCCTGCAGCGGAGTCCACGTGCGCTCTGTGTGCATTTTTGGAGCAGGTGACT 43988 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || |||||||||| || | || ||| | || || || ||||||||| Sbjct 43989 TGAACTGGATTCTTCATACACACCACTTGTTTGCCAATAAGTTTGAC 44035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347926394087580