Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5645 95.1 1e-14 >seq5645 Length=125407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| | |||||||| ||| || ||||| || ||||| | || Sbjct 11875 AGATCTTCCTCTCATGGCCCTACCTCCATGCCATGCCCTTTGCCAGTTCTACGTGGTGAA 11934 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||| |||| || || |||| || | || | || ||||| |||||||| || || Sbjct 11935 TGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGTGTGCCCTT 11994 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| || || || ||||| ||||| || || ||||||||||| | |||| Sbjct 11995 CAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAG 12044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343 ||| |||||| || ||||||||||| ||| | ||||| || ||| || ||| |||| | Sbjct 11223 ACAGATTATTCAGGTCAAGGAGTAGACCAACTGCAAAAAGTGATTGATACAATCAAAATG 11282 Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 ||||| | ||||||||||| || || || || |||||| | |||| Sbjct 11283 AACCCTGATGACAGAAGAATCATCTTGTGTGCTTGGAACCCAAAAG 11328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398791536013150