Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4223 212 6e-50 seq1865 111 2e-19 seq1414 102 8e-17 >seq4223 Length=550205 Score = 212 bits (234), Expect = 6e-50 Identities = 475/709 (67%), Gaps = 11/709 (2%) Strand=Plus/Minus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| || |||||||||||||| || ||||||| || ||| | |||||||| ||||| Sbjct 266929 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 266870 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 |||||| | |||| || || | || | || || | | | ||| || || | Sbjct 266869 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACA 266810 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 || |||||||| || |||||| |||||||| || | || ||||| || | Sbjct 266809 AATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 266750 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCA 14167 | || | ||||| | |||||| |||| | | | || || | | | | Sbjct 266749 TCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCTGC 266690 Query 14168 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 | |||| | | || ||||| || || | || ||||| ||||| || | || Sbjct 266689 TCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCT 266630 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||| ||||||||||| || |||||||| | || |||| | |||| |||| || Sbjct 266629 ATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTG 266570 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14347 | ||| ||||| || || || || |||| ||||| || || | |||||| ||| Sbjct 266569 AGCCAGAATATCAATGCAAAAGAACC-----AGAAGATTCCTTCCACGGTAGCAAAGGCT 266515 Query 14348 ATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGA 14406 | | ||||||||| | | || | ||||| || | ||||| |||||| || | Sbjct 266514 ACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCTGC 266456 Query 14407 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA--AATGTTCCTTCTCTTTA 14464 || || || | | || ||| | ||||| ||||| || | ||| | | |||| | | Sbjct 266455 CTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGA 266396 Query 14465 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 || ||| |||||| || ||||| || | |||||||||||||| ||||||||||||| Sbjct 266395 GTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATG 266338 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTT 14584 || || || || |||| ||||| | ||||||| || || ||| | ||| | Sbjct 266337 GCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGC 266278 Query 14585 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 || |||| |||||||| ||||| |||||||| | |||||| || |||| Sbjct 266277 TCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCA 266229 >seq1865 Length=140298 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 110711 CTACCACACGTTCTCC 110696 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 112286 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 112227 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||| Sbjct 112226 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 112167 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| ||||| |||||| Sbjct 112166 ATAAAGTCAAACGGATTT 112149 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/107 (80%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 14454 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||| ||| ||| |||||| || ||||| || | |||||||||||||| || Sbjct 108860 CCTT-TCTTTGGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 108804 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||||||| || || || |||||||| ||||| | ||||||| Sbjct 108803 TATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTG 108757 >seq1414 Length=619926 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 |||||||| || || ||||| || ||||| || | ||| ||||| | |||| ||| ||| Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 14288 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| ||||| ||||| || ||||| || ||||| ||||| || || ||||||||||| Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481859214755600