Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq61401 262 9e-66 >seq61401 Length=4951 Score = 262 bits (290), Expect = 9e-66 Identities = 439/625 (70%), Gaps = 16/625 (3%) Strand=Plus/Minus Query 1444 GAACCTCACGACCTCCTCCCCGATCATCTCATTAACCTGCTGCAGGCGCGTCTGCATTGG 1503 ||||| ||||||||| || |||||| ||||| | |||| | ||| |||| | || Sbjct 3841 GAACCGCACGACCTCGTCGCCGATCCACTCATCGAGCTGCGTAAAGCGACTCTGTAGCGG 3782 Query 1504 CGCGAGTTCCAAGCTTGCCCAGA---CCGCTGCTGC-GTCGCTAATGGATCCGAACCCAC 1559 ||| ||| | | || | || || | || || || || || || ||||| | Sbjct 3781 TTCGATTTC---GTTCGCACCGAATACCTCGGCCGCCGTGTCTGC-GGCCCCAAACCCGC 3726 Query 1560 CAGCGTTCTGCGGCACCACCCCCATCAGCTGCGGATAGACCCGCAGGCCGGCGAGCTGGT 1619 | | || ||||||||| || || || ||||| || || | |||||||| ||| Sbjct 3725 CTGTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGT 3666 Query 1620 CGTCGCGGCTGATGTTCTTGATTGAGCCGAACTCGTCCTTGGCCGCCACCTCGCTGACCG 1679 |||| || | | ||||||||| ||||||||||| |||| |||||| |||| Sbjct 3665 CGTCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACACCG 3606 Query 1680 GAATCAGTTGGATCCCCTCCTTCTTCCCGTTCGGCGCGTAGACGAACAGGTTGCGGAAAT 1739 | || || || || || ||||| || |||||||||||||| | ||||||||||||||| | Sbjct 3605 GGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGAAGT 3546 Query 1740 TGCCAGGCCCCTTCGCGGTCTTCAGCGCCGTGCGCAGCGCGTCGATGTCTTCCTCATTCT 1799 |||| || ||||| | ||||||||| ||||| |||||| | |||||||| |||| Sbjct 3545 TGCCCGGTCCCTTGCTAATTTTCAGCGCCTCGCGCAACGCGTCTACGTCTTCCTGTTTCT 3486 Query 1800 GTGCGGCGTCGGTCATGTAGAGGATGAAGCCGGCGTGGCTGCCGTTGTTGTAGTACTTAC 1859 | || ||||| |||||||| ||||| ||||||||||| | |||| | ||||| || Sbjct 3485 GCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTAGCGAC 3426 Query 1860 GCCGGAACAGCGTGGCCGACTCGTTCAGC-AGGGCGCTCTGTAGGGCGCAGAACCACTCC 1918 | || |||||||| ||||||||||||| | | | ||| || || |||| || | || Sbjct 3425 GACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCG-TGCAGCGCGCCGAGATATTCG 3367 Query 1919 GGCACTCCGTAGATTTCCTGATTGATGTCGGCCT-CGCGCAGTT--GGATCACGCTGCCC 1975 |||| || || | ||||||||||| |||| | | |||| |||||| |||| Sbjct 3366 GGCAGGCCATACACCTCCTGATTGATATCGGGTTCCATTAAGTTAAAGATCAC---GCCC 3310 Query 1976 TTCTCGAATTCGTGCTCATCCTTCCAGCTGCGCACCTGGTAGAACGTCTCCAGATCGGTG 2035 ||||| || ||| |||| || | ||||| |||| || ||||||||| Sbjct 3309 GGTTCGAACTCATGCCTTTCCTGTATGCCGTTGACCTGAAAGAAGCGCTGCAGATCGGTC 3250 Query 2036 CCGCGGCGCATGTACTTGGCCAGCG 2060 ||||||||||||| || ||| ||| Sbjct 3249 GCGCGGCGCATGTATTTCGCCGGCG 3225 Score = 250 bits (276), Expect = 6e-62 Identities = 556/816 (68%), Gaps = 35/816 (4%) Strand=Plus/Minus Query 2647 TGGGCCAGGTCGGTCCAGCCGGCGTCGAATTCGAGGCGGCCGTTCTTGATCACTGACCAG 2706 || || || || ||||| ||||| ||||||||||| ||||| || |||||| ||| || Sbjct 2634 TGCGCGAGATCCGTCCATCCGGCATCGAATTCGAGTCGGCCCTTGCCGATCACCGAC-AG 2576 Query 2707 GCCTTCATG-ACCAACTGCGTCTTCACCTCGGGCGAGTAGCTGAAGGTGCGCACCCC--- 2762 ||||| | || | | || || ||||| ||||||||| | | | ||| ||| | Sbjct 2575 GCCTTTGAGTACGAGCCGCCCTTTGACCTCTGGCGAGTAGTTAA--GCGCG-ACCGCGTT 2519 Query 2763 CGGGAAGAACTGGCGCACCAGCTGCGCGACGCCAGAGCCCATGCCGGTGGTGTCGA-CGC 2821 ||| |||||||||| || ||||| ||| | ||| |||||||| ||||||| ||| Sbjct 2518 CGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGC 2459 Query 2822 CGATGTAGGTGACCCAGTAGCGCTGGGTCACCTTGCGGATGAAC---TCGGCCTGTTCGG 2878 | ||||| || | | ||| || | |||| ||| |||||||| | Sbjct 2458 C-ATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTT 2403 Query 2879 CGAAGTCCTTGCCGCGGAATTGATGGCGCTCCAGCACGCGGAACTTGCCGCCCGGTACCG 2938 |||||||| ||||||| |||| | | ||||||||| |||||||| || || |||| Sbjct 2402 CGAAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCG 2343 Query 2939 CCGGAGGCGCCACCACCACCAGACCCGCGGTGTCGCCCGTCTCG-GCGGGGTCATAGCCC 2997 |||| ||||||||||| | ||| || || | |||||| || | || |||||||||||| Sbjct 2342 CCGGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC-GTATAACGCTGGGTCATAGCCC 2284 Query 2998 AGCCACACCTGGCGATCACCGAACGGCCGCAGCGCGAACGGCTTGTAGTCCTCCGACCAC 3057 | ||| || | || | |||| || || |||| | |||||| |||| || || Sbjct 2283 ACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTC---CCGT 2227 Query 3058 AGGTCCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTCGCGCCG 3117 || ||||| ||| |||||||| |||||| || | ||||||||| || | Sbjct 2226 AGCTCCCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTG 2167 Query 3118 TCGTCGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGC 3177 ||||| | ||| || ||||||| ||||||| | | |||||| | ||||||||| | | Sbjct 2166 TCGTCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCC 2107 Query 3178 AGCTCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATC 3237 |||||| | | |||||||| | ||| || | || | || || || || |||||| Sbjct 2106 AGCTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATC 2047 Query 3238 TGGCGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGC-AGGGCGTCATGACTTACGTC 3296 |||||||| || |||||||| || || || | ||| || || | || |||||| Sbjct 2046 TGGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCG-TGCGAGCGCCTTGTGTGCTACGTC 1988 Query 3297 GATCTTGATGCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGT 3356 | | | ||||| | | ||| |||||| | ||||| |||||||||| Sbjct 1987 CAGGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGA 1928 Query 3357 GTAGGCCTCATGCGCCA---TCGAACTGGGCGTCGAGAAGTAGG---TCCGGCGGTAGCG 3410 || ||||||||| || |||| ||||| ||||| |||| | | | | || Sbjct 1927 ATACGCCTCATGCTGCATGCTCGA---TGGCGTGGAGAAATAGGTTTTTCTCCACTTGC- 1872 Query 3411 CTTCTGCATCGCCATACCGCTGGCGACCTTGTTCAG 3446 | ||||||||||| || || ||||||||||| Sbjct 1871 --TATGCATCGCCATGCCCGATGCAACCTTGTTCAG 1838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113625447420680