Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4223 307 1e-78 seq56286 131 2e-25 seq1865 105 8e-18 seq1414 98.7 1e-15 seq13711 96.9 4e-15 >seq4223 Length=550205 Score = 307 bits (340), Expect = 1e-78 Identities = 622/919 (68%), Gaps = 13/919 (1%) Strand=Plus/Minus Query 33232 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 33287 |||| ||| |||||| |||| || | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 33288 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33347 || | | ||| | ||| || | || || || || ||||| || |||||| || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 33348 TTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAA 33407 | ||||| || ||||| ||||| || | ||| || |||| ||| || Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGC 266828 Query 33408 ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 || | ||| ||||| || ||||| ||||| ||||| | |||||||| || || Sbjct 266827 ATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTG 266768 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 || || ||||| | ||| | || || ||||| ||||| || || | ||| | || Sbjct 266767 AGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATG 266708 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 || | | || | | || ||| |||| | ||||| ||||||| || || Sbjct 266707 ATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCA 266648 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || ||||| | ||| ||||| ||||| | ||| || ||||| ||||| || ||| Sbjct 266647 AAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGC 266588 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 | || || | || || ||||| ||||| | || || || || ||||||||||| Sbjct 266587 ACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACC-----AGAAGATTCCT 266533 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCAC 33764 || || | ||||||||| | | | |||||| | | | | |||| ||||| Sbjct 266532 TCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAA 266473 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 ||||||||| |||||||| ||||||||||||||| | || |||||||| |||||| Sbjct 266472 GGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGA 266413 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 | || |||| || || |||| ||||| || || | |||||||||||||| ||| Sbjct 266412 AATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 266353 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 | |||||||| ||||| || || || | |||||||| | || || |||||||| ||| Sbjct 266352 CGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACT 266293 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | ||| || || | || |||||||| ||||| |||||||| | |||||| || Sbjct 266292 TCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAA 266233 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 |||| ||||| ||||||||| | || || | ||| | ||| | | || Sbjct 266232 GCCAGAACATGAGATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATG 266173 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 | ||||| | | |||| || || ||| |||||| || ||||| || |||||||| Sbjct 266172 TTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATC 266114 Query 34125 TTCCAGATGTCATGATATT 34143 | ||| || ||||| |||| Sbjct 266113 TGCCAAATATCATGGTATT 266095 >seq56286 Length=35121 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 10639 CTGTTTCTTATACCATA 10655 Score = 105 bits (116), Expect = 8e-18 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 7656 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 7715 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 7716 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCGGCTGCCATCTTGAGAACAGTTT 7775 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 62291 | || | |||||||| | ||| ||||||| | | || | || || |||| | ||||| Sbjct 7776 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAGGTCATCAGGAATTTCTTGTA 7835 Query 62292 T--TCTGAA 62298 | |||||| Sbjct 7836 TGCTCTGAA 7844 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 18971 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 19030 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 19031 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 19090 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 19091 AGGCTCCAGGTAAATAGC 19108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | | || || |||| ||| || || || || || || | Sbjct 14415 CATAGGTCTCATATGGGCCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 14474 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| | || || || || || ||||| |||| Sbjct 14475 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 14534 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 | | | |||||||| || || || | ||||| || ||||| || || || Sbjct 14535 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 14586 >seq1865 Length=140298 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || || ||||||| Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 33724 C 33724 | Sbjct 110711 C 110711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 108847 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 108788 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | || || ||||||||||||||| Sbjct 108787 ATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 108743 >seq1414 Length=619926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 500837 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGGG 500778 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || |||||||| || || ||||||| Sbjct 500777 TACTGGATTGGAAAGATGACAAATC 500753 >seq13711 Length=286415 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||||| |||||||||||| |||||||||| |||||||| || ||| Sbjct 113636 GGATCTTTGGGTTTGATTTTAGCATTGACTTTAAACAGACATAAGCATCCCCTTAACCTG 113695 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 113696 TACCTGCTTTTTGGATTT 113713 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | | || | |||||||| || |||||||||| || ||| Sbjct 118739 GTTACTTTCTATGATGTCTATGTTATTCTGCAAGCTTTTATACTGACTACTGCTGTATTT 118798 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| | |||||||||||| |||| || ||||| ||| ||| | |||| Sbjct 118799 CTTGGTTTGACTGTGTATACTCTACAATCTAAGAAGGACTTCAGCAAATTTGGAGCAGG 118857 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 || |||||||| ||||||||||||||||||||| ||||| ||||| || |||||| ||| Sbjct 100561 CGCGCTCCTCCGTCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCTTGC 100620 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 100621 ACATCCGCATGG 100632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629182507677600