Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4223 223 3e-53 seq1865 120 3e-22 seq1414 120 3e-22 seq56286 96.9 3e-15 >seq4223 Length=550205 Score = 223 bits (246), Expect = 3e-53 Identities = 487/720 (68%), Gaps = 16/720 (2%) Strand=Plus/Minus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || || |||||||| |||| || || ||| |||||||||| ||||||||| | | Sbjct 266920 TCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTTTCT 266861 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || | || || || | || | | ||| | | ||| ||||| || ||||| ||| Sbjct 266860 ACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCAATA 266801 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||| |||||| |||||||| || | || | || || | || |||| | Sbjct 266800 TACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTGAGG 266741 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT-TCCTTAGATGG 11601 || |||| |||||| |||| | || ||||| || | || || | || | || Sbjct 266740 AATTCCTGTTCTATCCTAACAGAATTGATGATGATTT-CTTTCACTCTCTGCTCCAAAGG 266682 Query 11602 TGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCT 11661 | |||| | ||||| ||||| | || ||||| ||||| ||||||||| ||||| Sbjct 266681 TTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCTATATCTCT 266622 Query 11662 ACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAA 11721 || || |||||||| |||||||| | || |||| | |||| |||| || | ||| || Sbjct 266621 GCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTGAGCCAGAA 266562 Query 11722 TATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCT 11781 ||| ||||| ||||||||| | |||| ||||| | ||||| ||||| || | Sbjct 266561 TATCAATGCAAAAGAACCAGAAGA-----TTCCTTCCACGGTAGCAAAGGCTACCACACG 266507 Query 11782 TTCTCCATA--TA-CCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTT 11837 ||||||| | || ||| ||| || | ||||| |||||||| || ||||| | Sbjct 266506 TTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCTGCCTTCTTCT 266448 Query 11838 TTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCT 11895 |||| || ||| | || || || || || | | |||| ||||| | || | Sbjct 266447 TTACACAAGGCATCATCTCAATGGCATTGAAGAGAA--ATTTACTTTCTTTGGAGTCCTT 266390 Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955 | || || || || | | |||||||||||| ||| | || |||||||| || ||||| Sbjct 266389 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATGGCAATTTG 266330 Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA 12015 || |||||||||| || || |||| | ||| || || ||| | ||| | || Sbjct 266329 GAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAA 266270 Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTA 12075 || |||||||| || |||||||| | |||||| || || || | ||| |||||| || Sbjct 266269 GTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATA 266210 >seq1865 Length=140298 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||| | ||||||||| || Sbjct 110829 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 110770 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 110769 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 110710 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 110709 ACCACACGTTCTCC 110696 >seq1414 Length=619926 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 513483 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 513424 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 513423 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACG 513364 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 513363 CCACCACTCTTTCCCC 513348 >seq56286 Length=35121 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||| | || || |||||||| ||||| |||||||| Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 10639 CTGTTTCTTATACCAT 10654 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || |||||||| || ||||| | || |||| | | | |||| || Sbjct 7656 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 7715 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || || ||||| ||||||||||| | | || | || Sbjct 7716 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCGGCTGCCATCTTGAGAACAGTTT 7775 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || || ||||| | |||||| Sbjct 7776 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTT 7812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468052351304800