Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4223 277 2e-69 seq13711 170 3e-37 seq56286 140 4e-28 seq1865 114 2e-20 seq1414 102 1e-16 >seq4223 Length=550205 Score = 277 bits (306), Expect = 2e-69 Identities = 585/871 (67%), Gaps = 9/871 (1%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 |||| ||| |||| | | ||| | ||| || | || || || || ||||| || || Sbjct 266959 GACACCACTGCCATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACT 266900 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 || | || ||| | ||||| || || || ||||| || || ||| || |||| Sbjct 266899 TCCAGGGAGATAGTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAA 266840 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 ||| || || | ||| ||||| |||||||| ||||| ||||| | |||| Sbjct 266839 TCCAGCTCCAGCATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAA 266780 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 |||| || | || || ||||| | ||| | || || ||||| ||||| || || Sbjct 266779 TTCACCCCAGTGAGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACA 266720 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 36151 | | | || || | | ||| | | || ||| | | | ||||| ||| Sbjct 266719 GAATTGATGATGATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAAC 266660 Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||| || || || || ||||||| ||| ||||| ||||| | ||| |||||||| Sbjct 266659 ATCAGGCAGGCAAAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAAT 266600 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 36271 ||||| || |||| || || | || || ||||| ||||| | ||||| || |||||| Sbjct 266599 GTGAGACCAGGCACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAA 266540 Query 36272 AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTG 36328 | ||||||| || | |||||||| | | | |||||| | | | | || Sbjct 266539 GA-----TTCCTTCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTG 266485 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || ||||| ||||||||| |||||||| |||||||||||||| |||| || Sbjct 266484 TCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATG 266425 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 ||||| |||||| | || |||| || || |||| || || ||||| | |||||| Sbjct 266424 GCATTGAAGAGAAATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTA 266365 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| ||| | |||||||| ||||| ||||| || | |||||||| | || || Sbjct 266364 TACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCT 266305 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 |||||||| |||||| | ||| || || | || |||||||| ||||| || ||||| Sbjct 266304 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTT 266245 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 | |||||| || |||| ||||| ||||||||| | || | | ||| | | Sbjct 266244 GTTGCAAAGAAAGCCAGAACATGAGATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCC 266185 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | | || | ||||| | | |||| || || ||| |||||| || ||||| Sbjct 266184 CAGTGCTGAATGTTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATT 266126 Query 36689 TTTTTATACATATTCCAGATGTCATGATATT 36719 || |||||||| | ||| || ||||| |||| Sbjct 266125 TTCTTATACATCTGCCAAATATCATGGTATT 266095 >seq13711 Length=286415 Score = 170 bits (188), Expect = 3e-37 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| ||| ||||| |||| ||| ||||||||||||||||| Sbjct 124915 TTTTTATTAACTGCTTCCAAAAACTGCAACAGGTGCAGGAATAGATTGATGATATCCAAA 124856 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| || ||||| || ||| |||| || || ||||| Sbjct 124855 TAGAGGCTGATGGCAGCTAATACATACTCCTCAGGTGACAGCCTATGCATCAGGGAGTGT 124796 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | |||||| || ||||| || ||||| |||| Sbjct 124795 GTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGCCAAGACCAACTCC 124736 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 | ||| ||| | || | ||||| Sbjct 124735 ATTGTCTCATTATGAAAAAATA 124714 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| || |||| |||||||||||||| |||||| | ||||| Sbjct 118857 CCTGCTCCAAATTTGCTGAAGTCCTTCTTAGATTGTAGAGTATACACAGTCAAACCAAGA 118798 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || || ||||||||||| || |||||||||| || |||| ||||||||||||||||| Sbjct 118797 AATACAGCAGTAGTCAGTATAAAAGCTTGCAGAATAACATAGACATCATAGAAAGTAAC 118739 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || ||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 100632 CCATGCGGATGTGCAAGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 100573 Query 9907 TGGAGGAGCACGCGTA--GAGGCTCGGCAT-GGCCATGGCG 9944 |||||||| || ||| | || || | | |||||||||| Sbjct 100572 CGGAGGAGCGCGGGTAACGGGGGTCAGAGTCGGCCATGGCG 100532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| |||||||||| | || |||||||| |||||||||| |||||||||||| || Sbjct 113713 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCTAA 113654 Query 9692 AATCAAGCCTATAGAT 9707 |||||| || | |||| Sbjct 113653 AATCAAACCCAAAGAT 113638 >seq56286 Length=35121 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | | Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 10639 CTGTTTCTTATACCATA 10655 Score = 105 bits (116), Expect = 9e-18 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 7656 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 7715 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 7716 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCGGCTGCCATCTTGAGAACAGTTT 7775 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 65084 | || | |||||||| | ||| ||||||| | | || | || || |||| | ||||| Sbjct 7776 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAGGTCATCAGGAATTTCTTGTA 7835 Query 65085 T--TCTGAA 65091 | |||||| Sbjct 7836 TGCTCTGAA 7844 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | || || | | Sbjct 18971 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 19030 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 19031 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 19090 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 19091 AGGCTCCAGGTAAATAGC 19108 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 29840 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 29899 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | |||||| | || || ||| |||| || |||| ||| || | Sbjct 29900 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 29959 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 29960 GTTCCACAGTGGTGACCCCACTGTATAAGCCTTGAATTACTTTCAT 30005 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | | || || |||||||| || || || || || || | Sbjct 14415 CATAGGTCTCATATGGGCCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 14474 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| | || || || | || ||||| |||| Sbjct 14475 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 14534 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 65590 | | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 14535 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 14586 >seq1865 Length=140298 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 36300 C 36300 | Sbjct 110711 C 110711 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 108847 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 108788 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 108787 ATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 108743 >seq1414 Length=619926 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657509115002800