Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4223 289 4e-73 seq1865 129 8e-25 seq56286 125 1e-23 seq1414 102 1e-16 >seq4223 Length=550205 Score = 289 bits (320), Expect = 4e-73 Identities = 618/919 (67%), Gaps = 13/919 (1%) Strand=Plus/Minus Query 49610 TTCT-TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGA---GACATAACTCCC 49665 |||| ||| |||||| |||| | | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 49666 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 49725 || | | ||| | ||| || | || || || || ||||| || |||||| || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 49726 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 49785 | ||||| || ||||| ||||| || || ||| || |||| ||| || Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGC 266828 Query 49786 ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 49845 || | ||| || || |||||||| ||||| ||||| | |||||||| || | Sbjct 266827 ATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTG 266768 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || || ||||| | ||| | || || ||||| ||||| || || | || | || Sbjct 266767 AGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATG 266708 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 || | | || | | || ||| || | | ||||| ||||||| || || Sbjct 266707 ATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCA 266648 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 || || ||||| | ||| ||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 266647 AAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGC 266588 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 | || || | || || ||||| ||||| | ||||| || |||||| ||||||| Sbjct 266587 ACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAA-----GATTCCT 266533 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCAC 50142 || || | |||||||| || | | |||||| | | || |||| ||||| Sbjct 266532 TCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAA 266473 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 ||||||||| |||||||| ||||||||||||||| | || |||||||| |||||| Sbjct 266472 GGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGA 266413 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 | || |||| || || |||| ||||| || || | |||||||||||||| ||| Sbjct 266412 AATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 266353 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 | |||||||| ||||| || || || | |||||||| | || || |||||||| ||| Sbjct 266352 CGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACT 266293 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 ||| | ||| || || | || |||||||| ||||| || ||||| | |||||| || Sbjct 266292 TCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAA 266233 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATA 50442 |||| ||||| |||||||| | || | | ||| | ||| | | || Sbjct 266232 GCCAGAACATGAGATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATG 266173 Query 50443 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 50502 | ||||| | | | || || || ||| |||||| || ||||| || |||||||| Sbjct 266172 TTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATC 266114 Query 50503 TTCCAGATGTCATGATATT 50521 | ||| || ||||| |||| Sbjct 266113 TGCCAAATATCATGGTATT 266095 >seq1865 Length=140298 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| || |||||||||| Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 50102 CAAC 50105 | || Sbjct 110711 CTAC 110708 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 108847 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 108788 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || || ||||||||||||||| Sbjct 108787 ATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCT 108743 >seq56286 Length=35121 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 10639 CTGTTTCTTATACCATA 10655 Score = 109 bits (120), Expect = 8e-19 Identities = 139/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 7656 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 7715 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 7716 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCGGCTGCCATCTTGAGAACAGTTT 7775 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 78963 | || | |||||||| | ||| ||||||| | | || | || || |||| | ||||| Sbjct 7776 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAGGTCATCAGGAATTTCTTGTA 7835 Query 78964 T--TCTGAA 78970 | |||||| Sbjct 7836 TGCTCTGAA 7844 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || || || || | | || Sbjct 18975 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 19034 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 19035 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 19094 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 19095 TCCAGGTAAATAGC 19108 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 || || ||||| || || |||||| ||| | |||||| || || || || ||||| Sbjct 14417 TAGGTCTCATATGGGCCATGTTCCTT---GGCCAGTTCACAGCTGGCTTCCAAGGCTCCA 14473 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 |||||||||||||| || || | |||||| | || || ||| | || ||||| ||| Sbjct 14474 TAATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGA 14533 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 || | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 14534 TACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 14586 >seq1414 Length=619926 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGCC 513362 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 513361 ACCACTCTTTCCCC 513348 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||||||||||||||| ||||| || || | Sbjct 500838 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTTTTTATACATTTTCCAAATATCGGG 500779 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 500778 GTACTGGATTGGAAAGATGACAAATC 500753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717544515698800