Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4223 215 5e-51 seq1865 114 1e-20 seq1414 102 8e-17 >seq4223 Length=550205 Score = 215 bits (238), Expect = 5e-51 Identities = 476/709 (67%), Gaps = 11/709 (2%) Strand=Plus/Minus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||| || |||||||||||||| || ||||||| || ||| | |||||||| ||||| Sbjct 266929 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 266870 Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715 |||||| | |||| || || | || | || || | | | ||| || || | | Sbjct 266869 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACA 266810 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775 || |||||||| || |||||| |||||||| || | || ||||| || | Sbjct 266809 AATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 266750 Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCA 13835 | || | ||||| | |||||| |||| | | || || | | | ||| Sbjct 266749 TCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCTGC 266690 Query 13836 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13895 | |||| | | || ||||| || || | || ||||| ||||| || | || Sbjct 266689 TCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCT 266630 Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||| ||||||||||| || |||||||| | || |||| | |||| |||| || Sbjct 266629 ATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTG 266570 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 14015 | ||| ||||| ||||| || || |||| ||||| || || | |||||| ||| Sbjct 266569 AGCCAGAATATCAATGCAAAAGAACC-----AGAAGATTCCTTCCACGGTAGCAAAGGCT 266515 Query 14016 ATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGA 14074 | | ||||||||| | | || | ||||| || | ||||| |||||| || | Sbjct 266514 ACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCA-ATCCAAGGCAAAGCCCAATCTGC 266456 Query 14075 tttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--A 14132 || || || | | || ||| | ||||| ||||| || | | ||| | ||||| | Sbjct 266455 CTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGA 266396 Query 14133 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14192 || ||| |||||| || ||||| || | |||||||||||||| ||||||||||||| Sbjct 266395 GTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATG 266338 Query 14193 GCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTT 14252 || || || || |||| || || | ||||| | || ||||| | ||| | Sbjct 266337 GCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGC 266278 Query 14253 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 || |||| |||||||| ||||| |||||||| | |||||| || |||| Sbjct 266277 TCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCA 266229 >seq1865 Length=140298 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || || || ||||| | Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 110711 CTACCACACGTTCTCC 110696 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 112286 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 112227 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||| Sbjct 112226 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 112167 Query 13644 ATAAAATCAAATGGATTT 13661 ||||| ||||| |||||| Sbjct 112166 ATAAAGTCAAACGGATTT 112149 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/113 (78%), Gaps = 5/113 (4%) Strand=Plus/Minus Query 14115 AAATA-TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 ||||| || | | ||||| ||| ||| |||||| || ||||| || | ||||||||| Sbjct 108869 AAATACTTACCTTTCTTTGGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATT 108812 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||| |||||||||||||| || || || |||||||| || || | ||||| Sbjct 108811 TCAGAATGTATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTC 108759 >seq1414 Length=619926 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| || || ||||| || ||||| || | ||| ||||| | |||| ||| ||| Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||| |||||||| || || || ||||| ||||| || || ||||||||||| Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479244254278000