Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4223 203 3e-47 seq1865 111 2e-19 seq1414 102 8e-17 >seq4223 Length=550205 Score = 203 bits (224), Expect = 3e-47 Identities = 471/708 (67%), Gaps = 9/708 (1%) Strand=Plus/Minus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||| || ||||| |||||||| || ||||||| || ||| | |||||||| || || Sbjct 266929 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 266870 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 |||||| | |||| || || | || | || || | | | ||| || || | | Sbjct 266869 GGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGCCACA 266810 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 || |||||||| || |||||| |||||||| || | || ||||| || | Sbjct 266809 AATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAAGGCC 266750 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA 13623 | || | ||||| | |||||| |||| | | | || || || | | | Sbjct 266749 TCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCTCTGC 266690 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 | |||| | | || ||||| || || | || ||||| ||||| || | || Sbjct 266689 TCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCT 266630 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||| ||||||||||| || |||||||| | || |||| | |||| |||| || Sbjct 266629 ATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTG 266570 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 | ||| ||||| || || || || |||| ||||| || || | |||||| ||| Sbjct 266569 AGCCAGAATATCAATGCAAAAGAACC-----AGAAGATTCCTTCCACGGTAGCAAAGGCT 266515 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAt 13863 | | ||||||||| | | || | ||||| | ||||| |||||| || | Sbjct 266514 ACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCC 266455 Query 13864 ttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA--AATGTTCCTTCTCTTTAG 13921 || || || | | || ||| | || || |||||||| | ||| | | |||| | || Sbjct 266454 TTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGAG 266395 Query 13922 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAG 13981 | ||| |||||| || ||||| || | |||||||||||||| |||||||||| || | Sbjct 266394 TCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATGG 266337 Query 13982 CTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTT 14041 | || || || |||| ||||| | ||||||| || || || | ||| | | Sbjct 266336 CAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCT 266277 Query 14042 CTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | ||||||||||||| || || |||||||| | |||||| || |||| Sbjct 266276 CCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCA 266229 >seq1865 Length=140298 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||| | ||||||||| | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 110711 CTACCACACGTTCTCC 110696 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 112286 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCTC 112227 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 112226 TGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTCC 112167 Query 13432 ATAAAATCGAATGGATTT 13449 ||||| || || |||||| Sbjct 112166 ATAAAGTCAAACGGATTT 112149 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Minus Query 13910 CCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| ||||| ||| ||| |||||| || ||||| || | |||||||||||||| || Sbjct 108860 CCTT-TCTTTGGAGTCCTT--AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 108804 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||||| || || || || |||||||| ||||| | ||||||| Sbjct 108803 TATGTTTTCCATGGCAATTTGGAAACCATAGAAACAGCGGGCTTCTG 108757 >seq1414 Length=619926 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| || || ||||| || ||||| || | ||| ||||| | |||| ||| ||| Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||| ||||| ||||| || ||||| || ||||| ||||| || || ||||||||||| Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478106203018800