Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq61401 165 2e-36 >seq61401 Length=4951 Score = 165 bits (182), Expect = 2e-36 Identities = 423/641 (66%), Gaps = 15/641 (2%) Strand=Plus/Minus Query 1524 GGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCG 1583 ||||||||| ||| ||||||||| | || | |||| |||||| | || || | Sbjct 2517 GGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGCC 2458 Query 1584 ATGTATTCGACGTTATATTTTTCGGTGAGTTTGCG---GATGGATTCAGCCTGGGTGGCA 1640 |||||||| ||||| | | | |||| |||| ||| | || ||||||| | Sbjct 2457 ATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTTCG 2401 Query 1641 AAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACC 1700 ||||||||||| ||| || | | || | | || |||||||||| |||| || Sbjct 2400 AAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCC 2341 Query 1701 GGCGGTGCCAGTACCACGCATCCGGCACTGTCGCCACGGTGTGACG---GGTCGTAACCA 1757 || || |||| || | ||||| |||||| || | ||| |||| || || Sbjct 2340 GGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC---GTATAACGCTGGGTCATAGCCC 2284 Query 1758 ATCCATACCGGGCGGGAGCCGAACGGATTGGCGGCAAAGGGTGCATAGTCTTCCCATTCT 1817 | |||||| || ||| | |||| || || || | ||| ||||||||| | Sbjct 2283 ACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGTAGC 2224 Query 1818 TCCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCG 1877 ||| || || ||||||||||| |||| || ||| |||||| | ||||||| ||||| Sbjct 2223 TCCCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCG 2164 Query 1878 TCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGC 1937 |||| || | |||||| |||||||| | | || |||| ||||| ||| | ||| Sbjct 2163 TCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGC 2104 Query 1938 TGCTCAATGTCGAACAGCGTGCAGCCGCCTTTCAGGGCGTCCTCAATGGTGACAATCTGC 1997 | ||| |||||||| |||| |||||| | ||||| || | || || ||||| Sbjct 2103 TCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGG 2044 Query 1998 CGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATT 2057 |||||||| | ||| | || || | || | || || || || || ||||| | Sbjct 2043 CGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCAGG 1984 Query 2058 TCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAACGGG 2117 | || | | || | | ||||| || |||||||| | || || | |||||| | Sbjct 1983 TGCA---GATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAA 1927 Query 2118 TAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGT 2158 || || || ||| || | || || |||||||||||||| Sbjct 1926 TACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGT 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98113921032600