Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq61401 150 4e-32 >seq61401 Length=4951 Score = 150 bits (166), Expect = 4e-32 Identities = 420/641 (66%), Gaps = 15/641 (2%) Strand=Plus/Minus Query 1523 GGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCG 1582 ||||||||| ||| ||||||||| | || | |||| |||||| | || || | Sbjct 2517 GGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGCC 2458 Query 1583 ATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCG---GATGGATTCCGCCTGAGTGGCA 1639 |||||||| |||||| | | | |||| |||| ||| | || ||||| | | Sbjct 2457 ATGTATTCCACGTTGAAATCCTGTGTGA---TGCGCCTGATTGCGTCGGCCTGGGCTTCG 2401 Query 1640 AAGTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACC 1699 ||||||||||| ||| || | | || | | || |||||||||| |||| || Sbjct 2400 AAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCC 2341 Query 1700 GGCGGTGCCAGTACCACGCATCCGGCGCTGTCGCCACGGTGTGACG---GGTCGTAACCA 1756 || || |||| || | ||||| |||||| || | ||| |||| || || Sbjct 2340 GGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCC---GTATAACGCTGGGTCATAGCCC 2284 Query 1757 ATCCAGACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCT 1816 | ||| || || ||| | |||| || || || | ||| ||||||||| | Sbjct 2283 ACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCCCGTAGC 2224 Query 1817 TCCAGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCG 1876 ||| || || ||||||||||| |||| || ||| |||||| | ||| ||| ||||| Sbjct 2223 TCCCACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCG 2164 Query 1877 TCAACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGC 1936 |||| || | |||||| |||||||| | | || |||| ||||| ||| | ||| Sbjct 2163 TCAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGC 2104 Query 1937 TGCTCAATGTCGAACAATGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGC 1996 | ||| ||||||| |||| || ||| | ||||| || | || || ||||| Sbjct 2103 TCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGG 2044 Query 1997 CGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTCGATT 2056 |||||||| | ||| | || || | || | || || || || || ||||| | Sbjct 2043 CGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTGTGCTACGTCCAGG 1984 Query 2057 TCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAACGGA 2116 | || | | || | | ||||| || ||||| || | || |||| |||||| | | Sbjct 1983 TGCA---GATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGTCCAGAATGAA 1927 Query 2117 TAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGT 2157 || || || ||| || | || || |||||||||||||| Sbjct 1926 TACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGT 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104367124992840