Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4223 210 2e-49 seq1414 114 1e-20 >seq4223 Length=550205 Score = 210 bits (232), Expect = 2e-49 Identities = 477/713 (67%), Gaps = 17/713 (2%) Strand=Plus/Minus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| || ||||| ||||| || || |||| | || ||| | |||||||| || ||| Sbjct 266929 ACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTCCATAAAGTCAAAA 266870 Query 12935 GGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990 ||||||| || || || || || | | | || || | | |||||| || Sbjct 266869 GGATTTTCTACTCTAAAAACC----TTGCTAAAATCCAGCTCCAGCATAAGTCTGTCTGC 266814 Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050 ||||| || || ||||| |||||||| ||| |||| || | | ||||| |||| Sbjct 266813 CACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCTTTACTGGCAA 266754 Query 13051 AGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTAC 13110 || ||||| | || | | |||||| ||| | | ||| | || ||| | | | Sbjct 266753 GGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTTCTTTCACTCT 266694 Query 13111 GTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAGTGCAA 13170 | ||| || || | | || || || ||||||| || ||||| |||||||| || Sbjct 266693 CTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAA 266634 Query 13171 TCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 ||| |||||| || || || || || |||||||| ||||| |||| || ||| |||| Sbjct 266633 ACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTT 266574 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 || | ||| ||||| ||||| ||||| ||| | ||||||| || | ||||| Sbjct 266573 CTTGAGCCAGAATATCAATGCAAAAGAACCAGAAGA-----TTCCTTCCACGGTAGCAAA 266519 Query 13291 CGCTATCAACCTTTCACCATACGTA--CTATTTTTACTCTCTATCCACTTTCTGGCCCAG 13348 |||| || | ||| ||| | ||| || ||| | ||| | ||||| ||||| Sbjct 266518 GGCTACCACACGTTCTCCACAGGTAGCCTCTTTGT-CTC-CAATCCAAGGCAAAGCCCAA 266461 Query 13349 TTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCC 13408 | ||| || | || || || ||| | || || || || || | | | || |||| Sbjct 266460 TCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCT 266401 Query 13409 TTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCC 13468 || ||| ||| ||||| || || | | ||||||||||| ||| | || |||||| Sbjct 266400 TTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCC 266341 Query 13469 ATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAAT 13528 || || |||||||| |||| ||||| | || |||| | ||||||||| | ||| Sbjct 266340 ATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAAC 266281 Query 13529 CTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | || | |||||||| || ||||| || ||||| | ||||| ||||| || Sbjct 266280 CGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 266228 >seq1414 Length=619926 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 513483 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 513424 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||||| Sbjct 513423 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACG 513364 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 513363 CCACCACTCTTTCCCC 513348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||||||||||||||| || ||||||||||| ||| |||| |||||||| || | Sbjct 520666 AATCTGTCAGCAACAAACTCGATATACTGTTTCATCAAAACACAATTCATTCCAATGAGG 520607 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 520606 CCAACTGGCAAGGCTTCTGTTAAAAA 520581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||| | ||| ||||| || |||||||| |||||||| ||||| |||||| Sbjct 522488 TGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 522429 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 522428 ATAAAATCAAAAGGATTTT 522410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430558672919340