Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq353 134 3e-26 seq15362 125 2e-23 seq25256 123 6e-23 seq1414 120 7e-22 seq9362 116 9e-21 seq15361 100 7e-16 seq1865 89.7 1e-12 seq26811 84.2 5e-11 >seq353 Length=562904 Score = 134 bits (148), Expect = 3e-26 Identities = 150/199 (75%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 104365 AGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGC 104424 ||| || || ||||| || |||||||| | ||| | || ||||| ||||| || |||| Sbjct 101348 AGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCCAGTTGCTTGCCAGT 101407 Query 104425 AAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTAC 104484 ||| |||| ||||| | ||||| ||| |||||||| |||||||| ||||| || ||||| Sbjct 101408 AAACATTA--CTCTGCTCATCAGTAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTAC 101465 Query 104485 ATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTT 104544 ||||||||| ||||| | ||||| |||| || || ||| || |||| ||| Sbjct 101466 ATTTTCTACTGTATCCCAGGGTTCAACCTTGAGAGTGGCTGTC---CCTTTAAGGATTTG 101522 Query 104545 TACAAATATCTGCATTTTG 104563 ||||| |||||||| ||| Sbjct 101523 CACAAAAATCTGCATCTTG 101541 >seq15362 Length=836705 Score = 125 bits (138), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| || ||||| || || ||||| || |||||||| | ||| || ||||| || Sbjct 451518 AGATGAAAAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGC 451577 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGA----TCAGGAGGTATTCCTTCTTTATCCTG 104469 | || |||||||| || || | | || | |||||||| |||||||| ||| |||| Sbjct 451578 TAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTCAGGAGGAATTCCTTCCTTAACCTG 451637 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 |||||| | ||||||||||||| ||||| ||||| |||| || || | ||||| Sbjct 451638 AATCTTGGTTTTTACATTTTCTGTTGTATCCAAGGGTTCAACCTTGAGAGTGACGGTCTT 451697 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| ||||| | || |||||||| ||| Sbjct 451698 -CCGGTAAGGGTTTTCATGAAAATCTGCATCTTG 451730 >seq25256 Length=205224 Score = 123 bits (136), Expect = 6e-23 Identities = 156/219 (71%), Gaps = 18/219 (8%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || || || || || || ||| Sbjct 40922 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 40863 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGT------------------ATTCCTTCTTTA 104464 ||||| || |||||||| || || ||||| || ||||||||| Sbjct 40862 GCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGAGGGATGCCTTCTTTA 40803 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| || || || || || | ||||||||| || || ||||| || || || Sbjct 40802 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATT 40743 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| || || || || || |||||||||||| Sbjct 40742 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTTG 40704 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 |||||||| || || ||||| || |||||||||||||| ||||| || || || || || Sbjct 41323 AGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCG 41264 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | ||||||||| || || ||||| || || || ||||| || || || || || || || Sbjct 41263 ATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAG 41204 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 41203 ATCTGCAT 41196 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || || || || || || ||| Sbjct 45213 GTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 45154 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGC 104478 ||||| || |||||||| || || ||||| || |||||||||||||| ||||| || Sbjct 45153 GCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGC 45098 >seq1414 Length=619926 Score = 120 bits (132), Expect = 7e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || ||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 513348 GGGGAAAGAGTGGTGGCGTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCT 513407 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | ||||| || || ||| | Sbjct 513408 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCCAATGAACTC 513467 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 513468 ATCAGCAGAGATGAAG 513483 >seq9362 Length=45889 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || | |||||| || |||||||| ||| | || |||| Sbjct 23835 ACAAGATGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACATCCATCTTGC 23776 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || | ||| ||| ||||| || || |||| ||||| |||||||| |||| ||| Sbjct 23775 AGCTGCTGGACAGGAAAGATTAGTCTTTGCTGATTAGGAGAAATTCCTTCCTTATGCTGG 23716 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| |||||| | ||| | ||||| ||||| Sbjct 23715 ATCTTGGCCTTTACATTTTCTATTGTATCTAAAGGTTCAATCTCAAAAGTAATGGTCTTC 23656 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | || | || ||||||| || Sbjct 23655 CCTGTAAGGGCTTCCATGAAACTCTGCATCTT 23624 >seq15361 Length=270988 Score = 100 bits (110), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 9/223 (4%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGT---TCTA 104401 || |||| ||||| | || || || || ||| | || | |||||| | ||| |||| Sbjct 65916 CTCAGTATAAGATGAAGAGTGGACTCCTTTTGAGTGTTCTTGTCAGACAAAGTATGTCTA 65975 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || || || |||||||| || || || || |||| |||||| ||| ||| Sbjct 65976 ---TCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTATTTCC 66032 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || |||||||||||| | || || ||||| | | || || Sbjct 66033 TTATCCTGGATCTTAGCCTTTACATTTTCTCCTGTGTCCAGGGGTTC-AGGT-GAGGGTG 66090 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTAC-AAATATCTGCATTTTG 104563 | || || || ||||| ||| | || ||| |||||||| ||| Sbjct 66091 AGGGTGTTCCCTGTAAGGGTTCTCACGAAAAATCTGCATCTTG 66133 >seq1865 Length=140298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||||||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 112144 GTAGAAAATCCGTTTGACTTTATGGAGAATATCTCACTGGAAGGGAAGACTAACTTCTTT 112203 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | ||| ||| | Sbjct 112204 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCGAGCCCAACAGAGAATTCT 112263 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 112264 TTTACCTTGGATGCTGACTTCTAA 112287 >seq26811 Length=67355 Score = 84.2 bits (92), Expect = 5e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || |||| || || | | | ||||| | || | || || ||||| || ||||| || Sbjct 59331 CCGCCTCAGAGTCTCAATGCAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCGGAC 59272 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| || | ||| || || || || ||||| || || || || ||||||||||| Sbjct 59271 AAAGTATGTCCATTTTCCAGCTGCTTGCCGGCAAAGATCAGTCTTTGCTGATCAGGAGGA 59212 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 ||||||| |||| ||| ||||| || ||||||||| Sbjct 59211 ATTCCTTTCTTATTCTGGATCTTGGCCTTTACATTT 59176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150208332604360