Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq61401 172 1e-38 >seq61401 Length=4951 Score = 172 bits (190), Expect = 1e-38 Identities = 356/526 (68%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 2260 CGGGTAGAATGAACGCACCAACTGGAATACACCGAGACCGAGGCCTGTTGCGTCAATGCC 2319 ||| ||||| || || | |||| | ||| | | |||| ||| || | ||| || | Sbjct 2518 CGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTGTCGATCGC 2459 Query 2320 GATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCTGCGCGGCAAA 2379 |||||||| |||||| | | || |||| | | ||| | || ||||| || | || Sbjct 2458 CATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGGGCTTCGAA 2399 Query 2380 GTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGAAACCACCGG 2439 ||||||||| ||| || | | ||||| ||||||||||||||| | ||| |||| Sbjct 2398 GTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGCACCGCCGG 2339 Query 2440 CGGCGCGAGTACGACACATCCGGCACTGTCGCCGGTGTGGGACGGGTCGTAGCCAATCCA 2499 ||||| | || | ||||| ||||||| | ||||| ||||| | ||| Sbjct 2338 GGGCGCCACCACAATCAGGCCGGCCGAGTCGCCGTATAACGCTGGGTCATAGCCCACCCA 2279 Query 2500 GACCGGGCGTGAGCCGAATGGATGGTCGGCGAACGGGGC--GAAGTCCTCCCATGTTTCC 2557 || || || | |||| || || |||| ||||| |||||| |||| | ||| Sbjct 2278 TACAGGTCGGTATGCGAAAGGGCGG--GGCGCCAGGGGCTTGAAGTCTTCCCGTAGCTCC 2221 Query 2558 ATCACG--TCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACAGATGCCTTATCGT 2615 |||| || |||||||||||||||| || ||| |||||| | |||||| | |||| Sbjct 2220 --CACGAATCCACCATGCAGCGCTGCAAGTCGGCGAGCGGGAAAATCGATGCCGTGTCGT 2163 Query 2616 CGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCT 2675 | | || | ||||| |||||||| | | ||||| |||| ||| | | |||| Sbjct 2162 CAATGAAGTGACACATCAACAGGTTCAGATATTCCTCGGGGCTGTACTCGAGCCCCAGCT 2103 Query 2676 GGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTCAATAGTGACAATCTGCC 2735 | | || ||||||||| |||| || || |||| ||||| || | || || ||||| | Sbjct 2102 CGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCGTCACGATCTGGC 2043 Query 2736 GCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTG 2781 ||||||| | || ||||||| | || | |||||||| |||| Sbjct 2042 GCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGAGCGCCTTGTG 1997 Score = 159 bits (176), Expect = 7e-35 Identities = 379/560 (68%), Gaps = 22/560 (4%) Strand=Plus/Minus Query 226 TTGAACCTGATGACCTCCATGCCGAGCCAGTCGTTTACCTCCCTGAATCTGTCCTGTAGC 285 ||||||| | |||||| ||||| ||| || | | || | | || | ||||||| Sbjct 3843 TTGAACCGCACGACCTCGTCGCCGATCCACTCATCGAGCTGCGTAAAGCGACTCTGTAGC 3784 Query 286 GGCGACAGCTCGTTGCGCACA-AATACCTTTGCCACCTTCTCAACGTCACCGAGTGAGCC 344 || | ||||| ||||| ||||||| ||| || | || || | || | ||| Sbjct 3783 GGTTCGATTTCGTT-CGCACCGAATACCTCGGCCGCCGTGTCTGCGGCCCCAAACCCGCC 3725 Query 345 GATATT-CTCGGGCTTGCCGCCCATAAGCTGGAACGGCACGCGGTGAGCGTCCATCAGGT 403 |||| ||||| | |||| || || || ||| ||||| || ||| | | ||||| Sbjct 3724 TGTATTGCTCGG-CACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGT 3666 Query 404 CG----GCGGCACTGGCTTTCTTGATATTGAAAAAGTCATCCTTTGTGGCGACCTCGCTC 459 || ||| ||| |||||||| || ||||| || ||||| | | ||||||| | Sbjct 3665 CGTCTCGCGTCACG----TTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGAC 3610 Query 460 AGTGGCACGATTTTTATGCCGTCCGGTTTCCCGTTCGGTGAGTAGAAAAACAGGTTTTTA 519 | || | | | || || ||| ||| |||||||| | ||| | |||||||| Sbjct 3609 ACCGGGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGG 3550 Query 520 AAGTTGCCGAG-CCCTTTAGAATTACGCATTGCATCGCGCAGCGATTCGACGTCAGTCGC 578 |||||||| | ||||| |||| || || ||||||| || || ||||| || Sbjct 3549 AAGTTGCCCGGTCCCTTGCTAATTTT-CAGCGCCTCGCGCAACGCGTCTACGTCT-TCCT 3492 Query 579 GCTT-TGCGCCGGGTCAGTCACATACATGATGTAACCTGCGTGCGCGCCGTTCTGGTAAT 637 | || ||||| | ||| |||| |||| ||| | || ||||||| | |||||| || | Sbjct 3491 GTTTCTGCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGT 3432 Query 638 ACTTGCGGCGGAACAGCGTCGCGGATTCATTCAGCCACGCAGAATTAAGCGCGCTGAGAT 697 | || || ||||||||||| || || |||| ||| || | | ||||||| ||||| Sbjct 3431 AGCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGAT 3372 Query 698 ATTCAGGCAGGCCGTAAATCTCCTGATTAATATCAGGCTCCAGCAGGT---GGAACACGG 754 |||| |||||||| || | ||||||||| ||||| || |||| | || || |||| Sbjct 3371 ATTCGGGCAGGCCATACACCTCCTGATTGATATCGGGTTCCATTAAGTTAAAGATCACG- 3313 Query 755 TATCGGGTGCGAACTCATGC 774 | ||| ||||||||||| Sbjct 3312 --CCCGGTTCGAACTCATGC 3295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97819803054920