Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq14347 165 1e-35 seq763 136 6e-27 >seq14347 Length=195022 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || | || || || |||||||||||| ||| |||| || ||||| || ||| Sbjct 105991 GTCTGGAATAACTGCTCATCGTCCCATTCTGGATGCTCTTGTTTAAGTACATCACATACT 106050 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || || |||||||| |||||||||||||||||||| Sbjct 106051 CTGTTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGGCCAAAG 106110 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | ||| || ||| || || | || || |||||||| | Sbjct 106111 ACCTCCTGGCCCACAGCAAACTGCAGATGTTCAGGGACGTGAGGCGGGTAGATCATCTTG 106170 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || |||| |||| Sbjct 106171 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAACTATCT 106219 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 107181 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCCTATGATCTGTCTTGAA 107240 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 107241 AAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 107300 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCAC 10183 || |||| |||| | |||||| ||||||||| Sbjct 107301 AGGGATGAACTTCCTTCTTAGAAGAAATTTTTCCAC 107336 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || | || || || ||||| ||| || | Sbjct 107790 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 107849 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| ||||| || || |||||||||||| ||| | |||| || ||||| | Sbjct 107850 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 107909 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 107910 GGTGGGCTGTCAATCAAATGTGATCTGGCTGAA 107942 >seq763 Length=1082010 Score = 136 bits (150), Expect = 6e-27 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || ||| ||||||| || || |||| || || || || ||||| || |||||||| Sbjct 938838 GTGGCAGTCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTAC 938779 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 |||| ||||||||| |||| ||| |||||| ||||||||||| || ||||| | || Sbjct 938778 TCCGGAGAGCAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCT 938719 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | || ||||| || ||||||| ||| ||| || || || | | | || | ||| Sbjct 938718 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGAGAAGCAGCCCCGGGTAG 938659 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| ||| || |||||||| || || || ||||| || || || ||||| ||| Sbjct 938658 AACTCCAAAGCATCAATGTCTCCATATAGCTCCTCCAGTTCAGCTGCCATCTCCTTCTCT 938599 Query 8972 CCT 8974 ||| Sbjct 938598 CCT 938596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707810341304800