Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq32032 145 1e-30 seq8117 138 2e-28 seq44719 129 9e-26 seq13494 122 1e-23 seq5202 116 6e-22 seq5732 104 4e-18 >seq32032 Length=36070 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| || || || |||||||| || ||||||||||| || ||| Sbjct 28889 GCCAAGCGCCATCGCAAGGTGCTGCGGGACAACATCCAGGGCATCACCAAGCCTGCCATC 28830 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || || || || ||||||||||| ||||||| | |||| || |||| Sbjct 28829 CGCCGTCTTGCCCGGCGCGGCGGAGTCAAGCGCATCTCTGGCCTCATCTACGAGGAGACC 28770 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || || || ||| |||||| Sbjct 28769 CGTGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAG 28710 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | || || || | || || || ||| Sbjct 28709 CACGCCAAGCGCAAGACGGTCACAGCCATGGACGTGGTATACGCCCTTAAGCGCCAGGGC 28650 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 28649 CGCACCCTCTACGGATTTGG 28630 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || || || || ||||| || ||||||||||| || ||| Sbjct 15667 GCCAAGCGCCATCGCAAGGCGCTGCGGGACAATATCCAGGGCATCACCAAGCCTGCCATC 15726 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || || || ||||||||||| ||||||| || |||| | ||||| Sbjct 15727 CGCCGCCTTGCCCGGCGCGGCGGAGTCAAGCGCATCTCTGGCTTCATCTACGGAGAGACC 15786 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || || ||| | | |||| || || || ||| || || Sbjct 15787 CGTGGAGTGCTGAAGGTGTTGCTGGAGAACATGATCCGGGACGCCGTCACCTACACTAAG 15846 Query 16613 CACGCTAAACGTAAGACTGTCAC 16635 ||||| || || ||||| ||||| Sbjct 15847 CACGCCAAGCGCAAGACAGTCAC 15869 >seq8117 Length=206787 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | | | ||||||| || ||||| || ||||| || || || Sbjct 143395 CGCTAAGCGCCATCGTAAGGTTTTAAGAGATAATATTCAAGGTATTACCAAACCGGCAAT 143336 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||| || ||||| |||||| | |||| || | |||| || |||| Sbjct 143335 CCGGCGTTTGGCTCGCCGCGGTGGGGTCAAGAGAATCTCCGGCCTCATCTACGAGGAGAC 143276 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 143275 TCGTGGGGTGCTTAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 143216 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || || || |||||||| ||||||| || | || || ||||| Sbjct 143215 GCACGCCAAGCGCAAAACGGTTACGGCCATGGATGTCGTCTACGCTCTCAAGCGCCAAGG 143156 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 143155 ACGCACTCTCTATGGCTTCGG 143135 >seq44719 Length=22286 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || |||| | |||| | || || || ||||| || ||||||||||| || Sbjct 1204 GCTAAGCGCCACCGCA-AGGTCTTGAGGGACAATATTCAAGGGATTACCAAGCCAGCGAT 1262 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||||| ||||| || || ||||| |||| || || | || || |||| Sbjct 1263 TCGGCGCCTTGCTCGGCGTGGAGGGGTGAAGCGGATCTCCGGCCTGATTTACGAGGAGAC 1322 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 1323 CCGGGGTGTGCTGAAGGTGTTCCTGGAGAACGTCATCCGGGACGCGGTCACCTACACCGA 1382 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || || || | || || ||||| Sbjct 1383 GCACGCCAAGCGCAAGACGGTCACTGCCATGGATGTGGTGTACGCGCTCAAGCGACAAGG 1442 Query 16672 CCG 16674 || Sbjct 1443 ACG 1445 >seq13494 Length=149102 Score = 122 bits (134), Expect = 1e-23 Identities = 190/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| || || || ||||||||||| ||||||||||| || || Sbjct 6963 CGCGAAACGCCATCGCAAGGTGCTGCGGGACAACATCCAAGGCATCACCAAGCCTGCCAT 6904 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || || || ||||| || |||| || | | || || |||| Sbjct 6903 CCGCCGCCTTGCCCGGCGCGGCGGGGTCAAACGCATCTCCGGCCTCATTTACGAGGAGAC 6844 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 6843 CCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 6784 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 6783 GCACGCCAAGCGCAAGACGGTCACGGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 6724 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | ||||| || || | |||| || Sbjct 6723 CCGCACCCTCTATGGCTTCGGCGGCTAATGTT 6692 >seq5202 Length=332107 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || |||||||| || ||||| || || || || || || Sbjct 248216 CTGCGGGACAACATCCAGGGGATTACCAAGCCTGCCATCCGCCGCCTTGCCCGGCGCGGC 248275 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | | || || |||| || | || ||||| | ||| Sbjct 248276 GGGGTCAAGCGCATCTCCGGCCTCATTTACGAGGAGACCCGCGGGGTGCTGAAGGTGTTC 248335 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || || ||||| ||| Sbjct 248336 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGCGCAAGACGGTC 248395 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | ||||| || | || || || ||||| | | || |||||||| Sbjct 248396 ACGGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTTGG 248454 >seq5732 Length=77181 Score = 104 bits (114), Expect = 4e-18 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || ||||| |||||||| | ||||||||||| || | Sbjct 28316 CGCCAAGCGCCACCGCAAAGTGCTGCGAGACAACATCCAGGACATCACCAAGCCCGCCAA 28257 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || | ||||| || || || |||||||| |||| || | || || || | Sbjct 28256 CCGCCGCCCTGCTCGGCGCGGAGGGGTCAAGCGCATCTCCGGCCTCATC---GAGGAAAC 28200 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || | || ||| ||||| Sbjct 28199 CCGCGGGGTACTGAAGGTGTTCCTGGAGAACGTGATCCGGGACACCGTCACCTACACCGA 28140 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| || |||| | ||||| || | || || || || Sbjct 28139 GCACGCAAAGCGCAAGACGGTCACGGCCGTGGACGTGGTCTACGCGCTCAAGCGCCAGGG 28080 Query 16672 CCG 16674 ||| Sbjct 28079 CCG 28077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79001442854310