Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4223 158 1e-33 seq11898 107 2e-18 seq7795 105 7e-18 seq1414 89.7 5e-13 >seq4223 Length=550205 Score = 158 bits (174), Expect = 1e-33 Identities = 517/801 (65%), Gaps = 11/801 (1%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| || |||||||| || | ||| ||| ||| | | |||| | | |||| | Sbjct 267002 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCCATCCT 266943 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 | || | || ||||| || || || || || ||||| |||||| || |||| || Sbjct 266942 CTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 266883 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 |||||| ||||| |||||||| | |||| | || || || |||| || | |||| Sbjct 266882 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCC-AGCATAA 266824 Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||| ||||| |||||||| ||||| || |||||| |||||||| || | | | Sbjct 266823 GTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTGAGCT 266764 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 |||| || | || | ||| | || | |||||| || | | | || || | Sbjct 266763 TTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATGATTT 266704 Query 21426 TTATTATCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 | | | || | | | ||| | | | ||||| ||||||| || ||||| Sbjct 266703 CTTTCACTCTCTGCTCCAA-AGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAG 266645 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 ||||| || |||||| ||| || || || | |||||| |||||||| | ||| |||| Sbjct 266644 TCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACG 266585 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 | |||| || || | ||| ||||| | ||||| | || |||| || || || Sbjct 266584 AGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACC-----AGAAGATTCCTTCC 266530 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664 |||| |||||| || || | ||||| || | |||| ||||| || ||||| Sbjct 266529 ACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGC 266470 Query 21665 TCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | |||||| ||||||| |||| || | ||||| || || || ||| Sbjct 266469 AAAGCCCAATCTGCCTTCTTCTTTAC-ACAAGGCATCATCTCAATGGCATTGAAGAGAAA 266411 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 || |||| | || | ||| |||||||||||||||| | Sbjct 266410 TTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACG 266351 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 ||| ||||| || || || || || | || ||||| | || |||| | ||||| || Sbjct 266350 TATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 266291 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 ||| || | ||||||||||||||||||| |||||||| | ||||| || || Sbjct 266290 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGC 266231 Query 21904 CAATATATTTTTTATAAAATA 21924 || | || ||||||||| Sbjct 266230 CAGAACATGAGATATAAAATA 266210 >seq11898 Length=103876 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| ||| | ||||||| | ||||||| ||| | || || | |||||| | | | Sbjct 24528 AGTTCCTCTGCAGTTTCAAACTGAACAAGATGAGCTTCTAAAGAGGCACAAAAGATCTGG 24469 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||||| ||| ||||||||||| ||||| || |||| ||||||||||||| Sbjct 24468 CTGAATGTCCAATTTCTTGTTTCTTCAGAAAAATAAAAACACTTATTTCCAAATCCAATC 24409 Query 130773 CATCCCTTTGGGCAAGTAACAT 130794 ||| | ||||||||| ||| Sbjct 24408 CATGTTTGGGGGCAAGTAGCAT 24387 >seq7795 Length=530467 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| ||| | ||||||| | ||||||| ||| | || || | |||||| || | | Sbjct 509906 AGTTCCTCTACAGTTTCAAACTGAACAAGATAAGCTTCTAAAGAGGCACAAAAGGTCTGG 509847 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||||||| || ||||||||||| ||||| || |||| ||||||||||||| Sbjct 509846 CTGAATGTCCAATTTCCTGTTTCTTCAGAAAAATAAAAACACTTATTTCCAAATCCAATC 509787 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||| | ||||| ||| |||| Sbjct 509786 CATGTTTGGGGGCAGGTAGCATA 509764 >seq1414 Length=619926 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | | Sbjct 522550 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATAACTGCAAAAC 522491 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||| | ||| || || |||||||| || ||||| || || || || Sbjct 522490 GCTGATACTCTGAAACCCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 522431 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 522430 CCATAAAATCAAAAGGATTTTC 522409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531364444530800