Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4223 298 7e-76 seq56286 134 2e-26 seq1865 120 4e-22 seq1414 107 2e-18 >seq4223 Length=550205 Score = 298 bits (330), Expect = 7e-76 Identities = 620/919 (67%), Gaps = 13/919 (1%) Strand=Plus/Minus Query 32954 TTCT-TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCC 33009 |||| ||| |||||| |||| || | |||| ||| ||| | | |||| ||| || Sbjct 267007 TTCTCTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACACCACTGCC 266948 Query 33010 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATA 33069 || | | ||| | ||| || | || || || || ||||| || |||||| || ||| Sbjct 266947 ATCCTCTTGTACTTACCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATA 266888 Query 33070 TTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA 33129 | ||||| || ||||| ||||| || || ||| || |||| ||| || Sbjct 266887 GTCTCCATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGC 266828 Query 33130 ATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 33189 || | ||| || || || ||||| ||||| ||||| | |||||||| || | Sbjct 266827 ATAAGTCTGTCTGCCACAAATTCAATATACTGCTTCATTAAGGTACAATTCACCCCAGTG 266768 Query 33190 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 || || ||||| | ||| | || || ||||| ||||| || || | || | || Sbjct 266767 AGCTTTACTGGCAAGGCCTCTGTGAGGAATTCCTGTTCTATCCTAACAGAATTGATGATG 266708 Query 33250 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 || | | || | | || ||| || | | ||||| ||||||| || || Sbjct 266707 ATTTCTTTCACTCTCTGCTCCAAAGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCA 266648 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || || ||||| | ||| ||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 266647 AAGTCACAGTGTAAACCTATATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGC 266588 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 | || || | || || ||||| ||||| | || || || |||||| ||||||| Sbjct 266587 ACGAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAA-----GATTCCT 266533 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCAC 33486 || || | ||||||||| | | | |||||| | | | | |||| ||||| Sbjct 266532 TCCACGGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAA 266473 Query 33487 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33546 ||||||||| |||||||| ||||||||||||||| | || |||||||| |||||| Sbjct 266472 GGCAAAGCCCAATCTGCCTTCTTCTTTACACAAGGCATCATCTCAATGGCATTGAAGAGA 266413 Query 33547 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33606 | || |||| || || |||| ||||| || || | |||||||||||||| ||| Sbjct 266412 AATTTACTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAA 266353 Query 33607 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 33666 | |||||||| ||||| || || || | |||||||| | || || |||||||| ||| Sbjct 266352 CGTATGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACT 266293 Query 33667 TCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 ||| | ||| || ||| |||| |||||||| ||||| || ||||| | |||||| || Sbjct 266292 TCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAA 266233 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 |||| ||||| ||||||||| | || || | ||| | ||| | | || Sbjct 266232 GCCAGAACATGAGATATAAAATACCTCTCCTCAAGCTCTAGGGCTTCCCAGTGCTGAATG 266173 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 | ||||| | | | || || || ||| |||||| || ||||| || |||||||| Sbjct 266172 TTCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATC 266114 Query 33847 TTCCAGATGTCATAATATT 33865 | ||| || |||| |||| Sbjct 266113 TGCCAAATATCATGGTATT 266095 >seq56286 Length=35121 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| |||| ||||| |||||||| ||||| |||||||| ||||| | Sbjct 10519 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATA 10578 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 10579 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 10638 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 10639 CTGTTTCTTATACCATA 10655 Score = 105 bits (116), Expect = 8e-18 Identities = 138/189 (73%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || ||||||||||| |||||| ||| | || || || |||||||| | Sbjct 7656 TCCAGCCATAGAAGTGCATACTCGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 7715 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 7716 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTTTCGGCTGCCATCTTGAGAACAGTTT 7775 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTA 62240 | || | |||||||| | ||| ||||||| | | || | || || |||| | ||||| Sbjct 7776 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGTTTCAGGTCATCAGGAATTTCTTGTA 7835 Query 62241 T--TCTGAA 62247 | |||||| Sbjct 7836 TGCTCTGAA 7844 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||||||||| | || || || || | | Sbjct 18971 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACG 19030 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 19031 CTGTTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 19090 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 19091 AGGCTCCAGGTAAATAGC 19108 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | | || || |||||||| || || || || || || | Sbjct 14415 CATAGGTCTCATATGGGCCATGTTCCTTGGCCAGTTCACAGCTGGCTTCCAAGGCTCCAT 14474 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||| | |||||| | || || || | || ||||| |||| Sbjct 14475 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCTGGACTTTCAAAAGGAT 14534 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | | |||||||| || || || | ||||| || ||||| || || || Sbjct 14535 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGG 14586 >seq1865 Length=140298 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| |||||||| ||||| || ||||| || || || || | Sbjct 110831 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 110772 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || || ||||||| Sbjct 110771 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 110712 Query 33446 C 33446 | Sbjct 110711 C 110711 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 108847 TCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 108788 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || || || |||||||| | || || |||||||| |||||| | ||| || ||| Sbjct 108787 ATTTGGAAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCTTGGCTAAACCGCTCC 108728 Query 33685 GCC 33687 || Sbjct 108727 ACC 108725 >seq1414 Length=619926 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| |||||||| |||||||| ||||| || || | || || Sbjct 513481 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 513422 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||| || Sbjct 513421 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAACGC 513363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622319035617200