Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq61401 461 2e-125 >seq61401 Length=4951 Score = 461 bits (510), Expect = 2e-125 Identities = 492/646 (76%), Gaps = 8/646 (1%) Strand=Plus/Plus Query 4864 GGCGGCACGCTGCGGCTTGAGCCCGCGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTTC 4923 ||||| ||||| ||| ||| |||| ||||| ||| | || ||| | ||||| | Sbjct 3200 GGCGGTACGCTCGCGCTCAAGCGGGCGCCGGCGAAATACATGCGCCGCGCGACCGATCTG 3259 Query 4924 AACGGCTTCGTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGTG 4983 | ||||| | | || |||||| ||||| |||| |||||||| || | ||||| Sbjct 3260 CAGCGCTTCTTTCAGGTCAACGGCATACAGGAAAGGCATGAGTTCGAACCGG---GCGTG 3316 Query 4984 TTCC---AGCTCGTGCGGCCGGACATCAATCAGGAGGTCTACGGCCTGCCCGAGTATCTG 5040 || | | || || || |||||||||||||| || ||||||||||| ||||| Sbjct 3317 ATCTTTAACTTAATGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCTC 3376 Query 5041 AGCTCGCTGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTAC 5100 || |||||||| |||| ||| ||||||| ||| |||||||||| || || || || Sbjct 3377 GGCGCGCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTAT 3436 Query 5101 GAGAACGGCAGCCACGCCGGCTTCATCCTGTACATGACCGACGCCGCGCAGAAGCAGGAC 5160 ||||||| | ||||||||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 3437 GAGAACGACTCGCACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGGAA 3496 Query 5161 GACGTGGACAACATGCGCGACGCGCTGAAGAACGCGAAGGGGCCTGGCAACTTCCGCAAC 5220 ||||| ||| ||||||| |||||||| | ||||| || ||||||||||||||| Sbjct 3497 GACGTAGACGCGTTGCGCGAGGCGCTGAAAATTAGCAAGGGACCGGGCAACTTCCGCAAC 3556 Query 5221 GTGTTCATGTACGCGCCGGGCGGGAAGAAGGACGGCATCCAGCTCATCCCCGTGTCCGAG 5280 ||||||||||||||||| ||| || ||||| || || ||||| ||||| ||||||||| Sbjct 3557 CTGTTCATGTACGCGCCGAACGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCGAG 3616 Query 5281 GTCGCCGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCC 5340 ||| | |||||||||||||| || |||||||||||||||||||| || |||||||||||| Sbjct 3617 GTCACGGCGAAGGACGAGTTTTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCGCC 3676 Query 5341 GCGCACCGCGTGCCGCCGCAGTTGCTTGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGT 5400 || || ||||| |||||||| | | ||| | |||||||||||| | |||||||| || Sbjct 3677 GCACATCGCGTACCGCCGCAACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTGGG 3736 Query 5401 ACACCGGACACCGCCGCGCGCGTGTTCGG-GCGCAACGAAATCAGGCCGCTACAGGCGCG 5459 | | ||||| || || || ||||| ||| ||||||||| ||||||||| || Sbjct 3737 GCCGCAGACACGGCGGCCGAGGTATTCGGTGCG-AACGAAATCGAACCGCTACAGAGTCG 3795 Query 5460 CTTCGCCGAGCTGAACGACTGGCTCGGCGAGGAGGTCGTGAGGTTC 5505 ||| | |||| | || ||| ||||||| ||||||||| ||||| Sbjct 3796 CTTTACGCAGCTCGATGAGTGGATCGGCGACGAGGTCGTGCGGTTC 3841 Score = 316 bits (350), Expect = 5e-82 Identities = 560/825 (68%), Gaps = 13/825 (2%) Strand=Plus/Plus Query 3503 TTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA---CAAGCGCTGGCGCAAG 3559 || ||| | ||||||||||| || || |||||||||||||| |||| ||| | || Sbjct 1829 TTTCGCAAACTGAACAAGGTTGCATCGGGCATGGCGATGCATAGCAAG---TGGAGAAAA 1885 Query 3560 ACGTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCG 3619 || || ||| |||||| || ||| | ||| |||||||| | ||||||| ||||| Sbjct 1886 ACCTATTTCTCCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGAC 1945 Query 3620 CACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGC-CACGAGGC 3678 || |||||||||||||| || ||| | | || | ||| ||| ||| |||| Sbjct 1946 CATTTCAACCGCGGCCGCGCTAAGGTCGATCATCTGCACCTGGACGT-AGCACACAAGGC 2004 Query 3679 GCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGA 3738 ||||| |||||| | | |||||||| ||||||||| ||||||||||| || || Sbjct 2005 GCTCGCACGCGGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAAGA 2064 Query 3739 TGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGC 3798 ||| | || ||||| ||| |||||||||| | | ||||||| | | |||||||||| | Sbjct 2065 CGCGGTTGCAGGCGGTTGCAACCTGTTCGATCTTGCCGAGCTGGGGCTCGAGTACAGCCC 2124 Query 3799 CGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAA 3858 |||||||| ||| ||| | ||||| || ||||| ||||| || ||| | ||| Sbjct 2125 CGAGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTCCC 2184 Query 3859 GCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTC 3918 ||| | ||| |||| ||||||||||| || |||||||| | | ||| |||||| Sbjct 2185 GCTCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACG---GGAAGACTTCAA 2241 Query 3919 GCNNNNNNNNNNNNNNNCGTTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCT 3978 || | |||| || || || ||||| ||||| || || ||| | Sbjct 2242 GCCCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGACCCAGCGTT 2301 Query 3979 CACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTT 4038 ||||||||||| || || || Sbjct 2302 ATACGGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAGTT 2361 Query 4039 CCGCGTGCTCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCGAT 4098 |||||||| | | || | ||||||| ||||| || | ||||||| || || Sbjct 2362 TCGCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGCAAT 2421 Query 4099 CGAGGCG-ATCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGG 4157 | ||||| ||||| ||| | |||||| | ||||| ||||||||||| || ||||| | Sbjct 2422 C-AGGCGCATCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACCGGCATCG 2480 Query 4158 GGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACT 4217 | || | |||||||||||||| ||| |||||| ||| ||| |||||||| ||||||| Sbjct 2481 GCCAGGATGTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTTAACTACT 2540 Query 4218 CGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCC 4277 |||| ||||| ||| || ||||| ||||| |||| ||| || || | || ||||| | Sbjct 2541 CGCCAGAGGTCAAAGGGCGGCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAGGGCCGAC 2600 Query 4278 TGCAATTCGACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4322 | ||||||| || || ||||| ||||| ||| | ||||||| Sbjct 2601 TCGAATTCGATGCCGGATGGACGGATCTCGCGCAATCCTTCATGG 2645 Score = 197 bits (218), Expect = 3e-46 Identities = 223/299 (75%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 19692 AAATGCGACCGGTGCCGCTCCGTCGTCGGATCGTCCCGCATTTCGAGCTCGAGCGCGGTC 19751 ||||| || |||||| || || ||||||||||| || | ||| | || || | ||| Sbjct 1411 AAATGAGAGCGGTGCTTGTCGGTGGTCGGATCGTCGCGGACTTCCATTTCCAGAGAGGTT 1470 Query 19752 GTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTCACGAGCCACGGCGTCTCGTCG 19811 || | || | ||||||| ||||||||||| |||||||||||||||||| || |||| | Sbjct 1471 GTCAGGCCCGCTTCGCCGAGCGTGTGCGTTGCCTTCTTCACGAGCCACGGTGTTTCGTTG 1530 Query 19812 ATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTTCCGGGAACAGTTCGGCGCGGCCG 19871 ||||||||||| ||||| | || | || |||| |||||||| | || | ||||||| Sbjct 1531 ATTTCCGGTTTTAAGCCGGCGACATTTACCGGCAGCTCCGGGAATACCTCAGGGCGGCCG 1590 Query 19872 CGCGCGAGCGTGTAGCTCATCGTCGCCTGGCTGCGCTGCATCCGCTTGAACTCCGCTTGC 19931 ||||| | ||| | |||||||||||||||||| | || |||| | ||| | Sbjct 1591 AGCGCGCGTTGGTAAGAAAATGTCGCCTGGCTGCGCTGCGTGCGTGCGAACGCGGCTCGA 1650 Query 19932 GCGGCAGCGCGCGCTTCCGCCTCCGTTGCGTAGTCTTCCGGCAGCACCTTCACGTTCTT 19990 || || ||||| ||||| | || || || ||||||||||||| || || |||||||| Sbjct 1651 GCTGCCGCGCGTGCTTCGTCTTCGGTCGCATAGTCTTCCGGCAAAACTTTAACGTTCTT 1709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120207935638540