Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30640 107 1e-18 seq24341 102 5e-17 seq27378 86.0 4e-12 seq26416 86.0 4e-12 >seq30640 Length=90659 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 |||||||||||||||||||||||||| || |||||||| ||| | || ||||||||| Sbjct 48004 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGACAGTGGGAATCTCGTT 47945 Query 25958 AATCCTTTCATGCGCGTCACTAATTAG 25984 |||| ||||||||||||||||||||| Sbjct 47944 CATCCATTCATGCGCGTCACTAATTAG 47918 >seq24341 Length=104210 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | | Sbjct 62213 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTTGTG 62272 Query 20008 GTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 62273 CCACTATTTAGCCTTA 62288 >seq27378 Length=557180 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||| Sbjct 335695 CTCTCTCTTCAAAGTTCTTTCCAACTTTCCCTTACGGTGCTTGTTGACTATCGGTCTCGT 335636 Query 20007 GGTAATATTTAGCCTTA 20023 | | || ||||||| Sbjct 335635 GCCGGTGTTCAGCCTTA 335619 >seq26416 Length=226618 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||||| |||||||| | |||||||||| |||| ||||||| Sbjct 50348 CTCTCTCTTCAAAGTCCTTTTCTCCTTTCCCTTATGGTACTTGTTGACTATTGGTCTCGT 50289 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 50288 GCTGGTATTTAGCCTTA 50272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334617891426770