Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_008201.1 Length=34525 Score E Sequences producing significant alignments: (Bits) Value seq61401 123 5e-24 >seq61401 Length=4951 Score = 123 bits (136), Expect = 5e-24 Identities = 281/420 (67%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 567 CCAAAACCGCCGGTGTTATTTGGGATAATCCCCATCAGTTGTGGTGGCACACGGTGAGCA 626 ||||| ||||| || || | || | | || || ||||| || || || || || || Sbjct 3735 CCAAACCCGCCTGTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCG 3676 Query 627 GCTAACACATCATCACGGCTCACGTTCTTGATATTAAAAAACTCATCTTTTGCCGACACA 686 || | || || || || ||||||||||||| ||||||||||| || || |||| || Sbjct 3675 GCGAGCAGGTCGTCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACC 3616 Query 687 TCAGCAATCGGAATAATCTGTATTCCATCTTTCTTGCCGTTTGGTGCGTGGACGAACAAG 746 || | | ||| || | ||| ||||| || || || ||||| || |||| | ||||| | Sbjct 3615 TCGGACACCGGGATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGG 3556 Query 747 TTTTTAAAATT-CCCCACCCCTTTTGACTGCTTGAGCTGCTGGCGAATATTTTCAACATC 805 || || || ||| ||||| | | || ||| || ||| | || || || Sbjct 3555 TTGCGGAAGTTGCCCGGTCCCTTGCTAAT-TTTCAGCGCCTCGCGCAACGCGTCTACGTC 3497 Query 806 TTCTTGTTTTTGTGACGCATCGCTCATATAAAACACAAAGCCGGCGTGAGCTCCATTTAA 865 ||| ||||| || | || || |||| || | | |||||||||||| | | || Sbjct 3496 TTCCTGTTTCTGCGCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTC 3437 Query 866 AAAATACTTACGGCGAAACAGAGTAGCACTCTCATTTAACCACGCAGATTGCAGGGCCGA 925 | | || ||| |||||||| || || ||| || ||||| || | ||||| || Sbjct 3436 ATAGTAGCGACGACGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGCC 3377 Query 926 AAGATATTGTGGCAAGCCGTAAATATCTTGATTAATATCAGGCTCAAGCAAGTGATAGAT 985 ||||||| |||| ||| || | || ||||| ||||| || || | |||| | |||| Sbjct 3376 GAGATATTCGGGCAGGCCATACACCTCCTGATTGATATCGGGTTCCATTAAGTTAAAGAT 3317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110252681480980