Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4223 210 2e-49 seq1865 100 3e-16 >seq4223 Length=550205 Score = 210 bits (232), Expect = 2e-49 Identities = 436/640 (68%), Gaps = 12/640 (2%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| |||| | | ||| |||| | ||| |||||||| ||||||||| ||| Sbjct 266683 GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCTATATCT 266624 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || || | ||||| ||||| | ||| || | |||||| ||||||||||||| Sbjct 266623 C-TGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAGTCCTTGTTTCTTGAGCCA 266565 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| | |||||| ||||||| | | |||||||||| ||||| || || | Sbjct 266564 GAATATCAATGCAAAAGAACCAGAAGA-----TTCCTTCCACGGTAGCAAAGGCTACCAC 266510 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 |||||| || | | || || | ||||| ||||||||||| || || || Sbjct 266509 ACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTT 266450 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360 ||| | |||||| | | || || || || || || | | | || | || || Sbjct 266449 CTTTACACAAGGCATCATCTCAATGGCATTGAAGAGAAATTTACTTTCTTTGGAGTCCTT 266390 Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 ||||| || || || | ||| ||||||||||||| | | || ||||| |||||||| Sbjct 266389 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAACGTATGTTTTCCATGGCAATTTG 266330 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| | |||||||| | ||||| || ||||| |||||||| ||| | ||| || | Sbjct 266329 GAAGTCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAA 266270 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 |||||||| ||||| ||||| || |||||| ||||||| | ||| |||||||| Sbjct 266269 GTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATA 266210 Query 93541 TTTCTCATC-ATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGACTTCT 93598 |||| || | || || | | ||||| | | || | || || || ||| | || || Sbjct 266209 CCTCTCCTCAAGCTCTAGGGCT-TCCCAGTGCTGAATGTTC-TTAGAGAGA-CCACCTCC 266153 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGA 93658 || | | |||||| || || || ||| || ||||| | ||| || || || |||| Sbjct 266152 TCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCCAAATATCATGGTATTCG 266093 Query 93659 ATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 | ||| ||||||||| | | |||| ||| |||||| Sbjct 266092 GTAAAAAAGATGACAAAATGGCGAAGGTTTTCTCTTAGTA 266053 >seq1865 Length=140298 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | ||| || | |||||||||||||||||||| ||||| || ||| Sbjct 110811 TCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 110752 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || |||||||| || ||||| || || | |||||| Sbjct 110751 AAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCTACCACACGTTC 110699 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 108841 ATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 108782 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||| || |||||||||||||| Sbjct 108781 AAACCATAGAAACAGCGGGCTTCTGTAATCTGCACTTCTTG 108741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556299275490800