Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14784 149 1e-30 seq2137 134 3e-26 seq25256 131 3e-25 >seq14784 Length=15745 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||| | |||||||| | | |||||||| |||||||| || || || Sbjct 8619 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGAC 8678 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || |||||||| | |||||||||||| || || | || || ||||| || || Sbjct 8679 AGAGTGTGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 8738 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || |||||||| ||||| |||||||| |||||||||||| | ||||| Sbjct 8739 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACC 8798 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || | || | |||||| || || |||||||| Sbjct 8799 TCCAGGGTGATGGTCTTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8845 >seq2137 Length=523945 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | |||||||| || |||||||| || || || || || | |||||||| Sbjct 114423 ACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCTTCC 114482 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||||||||| || || | || || ||||| || || ||||| ||||||||||| Sbjct 114483 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 114542 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| ||||||||| |||||||||||| Sbjct 114543 ATCTTGGCCTTGACGTTCTCGATGGTGTC 114571 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||||||||| || || | || || ||||| || || ||||| || || Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| ||||| ||||||| |||||||||||| | || || |||| ||||||| Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || | || || ||||| ||||||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 >seq25256 Length=205224 Score = 131 bits (144), Expect = 3e-25 Identities = 164/227 (72%), Gaps = 20/227 (9%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || |||||||| |||||||| ||||| ||||| || | ||||| || | ||| Sbjct 40929 GTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTG 40870 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA------------------ATGCC 68359 ||| || || || ||||| || || |||||||| || ||||| Sbjct 40869 CTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGAGGGATGCC 40810 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCA 68418 ||| || || || ||||| ||||| ||| ||||||||| || |||| || || |||| Sbjct 40809 TTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATC-GCTGGGCTCCACCTCCA 40751 Query 68419 AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || ||||||||||| ||||| ||||||||| || Sbjct 40750 GGGTGATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTTG 40704 Score = 109 bits (120), Expect = 1e-18 Identities = 103/129 (80%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || || || |||||||| || |||||||| || || || ||||| ||||| ||| |||| Sbjct 41323 AGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCG 41264 Query 68394 ATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 ||||| || |||| || || |||| ||||||||| || || ||||||||||| ||||| Sbjct 41263 ATGGTATC-GCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAA 41205 Query 68453 TATCTGCAT 68461 |||||||| Sbjct 41204 GATCTGCAT 41196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920693059012400