Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4223 127 4e-24 >seq4223 Length=550205 Score = 127 bits (140), Expect = 4e-24 Identities = 302/448 (67%), Gaps = 19/448 (4%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| || | ||| |||||||| ||||| ||| ||| |||| | Sbjct 266228 CTGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGC 266287 Query 42483 AAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 |||| || ||| ||| || || ||||| ||||| | |||||| || ||||| || | Sbjct 266288 CAAGAAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGACTTCCAAATTGCCATGGAAA 266345 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCG 42597 || | | ||||| |||| | || |||| |||| ||||| ||| || | Sbjct 266346 ACATACGTTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAGGACTCCAAAG 266402 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | |||| || ||||| ||||| |||| |||||| || | ||||||||||| || | Sbjct 266403 AAAGTAAATTTCTCTTCAATGCCATTGAGATGATGCCTTGTGTAAAGAAGAAGGCAGATT 266462 Query 42658 GGGCGCTCAACTGGATCGAGAGTC-CCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 |||| | ||||| | ||| | || || || | || || | ||||||||||| Sbjct 266463 GGGCTTTGCCTTGGATTG-GAGACAAAGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTT 266521 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CA 42775 | |||| || || ||||||| || | || || | || |||||||||||| | Sbjct 266522 GCTACCGTGGAAGGAATCTTCT-----GGTTCTTTTGCATTGATATTCTGGCTCAAGAAA 266576 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 |||| ||| |||| || ||||| || || || ||||| || ||||| || || | Sbjct 266577 CAAGGACTCG-TGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGAGATATAGGTTT 266635 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || | |||||||||||||| ||||| Sbjct 266636 ACACTGTGACTTTGCCTGCCTGATGTTC 266663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943386951959200