Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq61401 369 8e-98 >seq61401 Length=4951 Score = 369 bits (408), Expect = 8e-98 Identities = 571/817 (70%), Gaps = 17/817 (2%) Strand=Plus/Plus Query 3501 TGAACAAGGTTGCGTCGGGCATGGCGATGCA---CAAGCGCTGGCGCAAGACCTACTTCA 3557 ||||||||||||| ||||||||||||||||| |||| ||| | || ||||| ||| Sbjct 1839 TGAACAAGGTTGCATCGGGCATGGCGATGCATAGCAAG---TGGAGAAAAACCTATTTCT 1895 Query 3558 GCACGCCGTCGAGTGTCACGCACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACC 3617 |||||| ||||| | ||| ||||||| | ||||||| ||||| || |||| Sbjct 1896 CCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGACCATTTCAACC 1955 Query 3618 GCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGC-CACGAGGCGCTCGTGCGC 3676 |||||||||| || ||| | | || | ||| ||| ||| ||||||||| ||| Sbjct 1956 GCGGCCGCGCTAAGGTCGATCATCTGCACCTGGACGT-AGCACACAAGGCGCTCGCACGC 2014 Query 3677 GGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCG 3736 ||| | | |||||||| ||||||||| ||||||||||| || |||||| | || Sbjct 2015 GGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAAGACGCGGTTGCA 2074 Query 3737 GGCGGCTGCAACCTGTTCGACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTC 3796 ||||| |||||||||||||| | | ||||||| | | ||| |||||| ||||||||| Sbjct 2075 GGCGGTTGCAACCTGTTCGATCTTGCCGAGCTGGGGCTCGAGTACAGCCCCGAGGAATAT 2134 Query 3797 GCGAACCTGCTGATGTGCCACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGAC 3856 ||||||| ||||||| |||||||| ||||| || ||| | ||| ||| | ||| Sbjct 2135 CTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTCCCGCTCGCCGAC 2194 Query 3857 CTGCAACGCTGCATGGTCGACTCGTGGGAGGAATGGGCGGACGACTTTTCGCCGCTGCTG 3916 |||| ||||||||||| || ||||||||| | | ||| ||||| ||| ||| | Sbjct 2195 TTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACG---GGAAGACTTCAAGCCCCTGGCG 2251 Query 3917 CTGCGTCCGTTCGGTCATCGCGA--GGTGTGGGTCGGCTACGATCCGGCGCTCACGGGCG 3974 | || || |||| ||| ||| || ||||| ||||| || || ||| | |||| Sbjct 2252 CCCCGCCCTTTCG--CATACCGACCTGTATGGGTGGGCTATGACCCAGCGTTATACGGCG 2309 Query 3975 ACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCGCGTGC 4034 ||||||| || || || ||||||| Sbjct 2310 ACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAGTTTCGCGTGC 2369 Query 4035 TCGAACGTCACCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAATCGAGGCG- 4093 | | | || | ||||||| ||||| || | ||||||| |||||| ||||| Sbjct 2370 TGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGCAATC-AGGCGC 2428 Query 4094 ATCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGGGGCAAGGC 4153 ||||| ||| | |||||| | ||||| ||||||||||| || ||||| || || | Sbjct 2429 ATCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACCGGCATCGGCCAGGAT 2488 Query 4154 GTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACTCGCCCGAG 4213 |||||||||||||| ||| |||||| ||| ||| |||||||| ||||||||||| ||| Sbjct 2489 GTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTTAACTACTCGCCAGAG 2548 Query 4214 GTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCCTGCAATTC 4273 || ||| || ||||| ||||| |||| ||| || || | || ||||| || ||||| Sbjct 2549 GTCAAAGGGCGGCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAGGGCCGACTCGAATTC 2608 Query 4274 GACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4310 || || || ||||| ||||| ||| | ||||||| Sbjct 2609 GATGCCGGATGGACGGATCTCGCGCAATCCTTCATGG 2645 Score = 212 bits (234), Expect = 1e-50 Identities = 208/266 (78%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 5229 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5288 ||| || ||||| || || ||||| || || |||||||||||| | |||||||||||||| Sbjct 3577 CGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCGAGGTCACGGCGAAGGACGAGTT 3636 Query 5289 CTTCAACATCAAGAACGTGACGCGCGACGATCTGCTCGCCGCGCACCGCGTGCCGCCGCA 5348 || |||||||||||||||||||| ||||| ||||||||||| || ||||| |||||||| Sbjct 3637 TTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCGCCGCACATCGCGTACCGCCGCA 3696 Query 5349 GTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCCGCGCG 5408 | ||||| | |||||||||||| | |||||||| || | | || || || || Sbjct 3697 ACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTGGGGCCGCAGACACGGCGGCCGA 3756 Query 5409 TGTGTTCGG-GCGCAACGAAATCAGGCCGCTACAGGCGCGCTTCGCCGAGCTGAACGACT 5467 || ||||| ||| ||||||||| ||||||||| ||||| | |||| | || | Sbjct 3757 GGTATTCGGTGCG-AACGAAATCGAACCGCTACAGAGTCGCTTTACGCAGCTCGATGAGT 3815 Query 5468 GGCTCGGCGACGAGGTCGTGACGTTC 5493 || ||||||||||||||||| |||| Sbjct 3816 GGATCGGCGACGAGGTCGTGCGGTTC 3841 Score = 205 bits (226), Expect = 2e-48 Identities = 227/303 (75%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 17778 GCGAAAATGCGATCGGTGCCGATCGGTCGTCGGGTCATCCCGCATTTCGAGCTCGAGCGC 17837 ||||||||| || |||||| ||||| ||||| || || || | ||| | || || | Sbjct 1407 GCGAAAATGAGAGCGGTGCTTGTCGGTGGTCGGATCGTCGCGGACTTCCATTTCCAGAGA 1466 Query 17838 GGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTCACGAGCCACGGCGTCTC 17897 ||| || | || | ||||||| ||||||||||| |||||||||||||||||| || || Sbjct 1467 GGTTGTCAGGCCCGCTTCGCCGAGCGTGTGCGTTGCCTTCTTCACGAGCCACGGTGTTTC 1526 Query 17898 GTCGATTTCCGGTTTGAAGCCTGACACGGTCACGGGCATTTCCGGGAACAGTTCGGCGCG 17957 || |||||||||||| ||||| | || | || |||| |||||||| | || | ||| Sbjct 1527 GTTGATTTCCGGTTTTAAGCCGGCGACATTTACCGGCAGCTCCGGGAATACCTCAGGGCG 1586 Query 17958 GCCGCGCGCGAGCGTGTAGCTCATCGTCGCCTGGCTGCGCTGCATCCGCTTGAACTCCGC 18017 |||| ||||| | ||| | |||||||||||||||||| | || |||| | || Sbjct 1587 GCCGAGCGCGCGTTGGTAAGAAAATGTCGCCTGGCTGCGCTGCGTGCGTGCGAACGCGGC 1646 Query 18018 TTGCGCGGCAGCGCGCGCTTCCGCCTCCGTCGCGTAGTCTTCCGGCAGCACCTTCACGTT 18077 | | || || ||||| ||||| | || ||||| ||||||||||||| || || ||||| Sbjct 1647 TCGAGCTGCCGCGCGTGCTTCGTCTTCGGTCGCATAGTCTTCCGGCAAAACTTTAACGTT 1706 Query 18078 CTT 18080 ||| Sbjct 1707 CTT 1709 Score = 201 bits (222), Expect = 3e-47 Identities = 233/310 (75%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 4852 GGCGGCACGCTGCGGCTCGAGCCCGCGCTCGCGAAGTACGTCCGGCGCAAGGCCGATTT- 4910 ||||| ||||| |||| ||| |||| ||||| ||| | || ||| | ||||| | Sbjct 3200 GGCGGTACGCTCGCGCTCAAGCGGGCGCCGGCGAAATACATGCGCCGCGCGACCGATCTG 3259 Query 4911 CAGCGGCTTCGTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTTCGAGCCCGACAGCGT 4970 ||||| |||| | | || |||||| ||||| |||| |||||||| || | |||| Sbjct 3260 CAGCG-CTTCTTTCAGGTCAACGGCATACAGGAAAGGCATGAGTTCGAACCGG---GCGT 3315 Query 4971 GTTCC---AGCTCGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCT 5027 | || | | || || || |||||||||||||| |||||||||||||| ||||| Sbjct 3316 GATCTTTAACTTAATGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCT 3375 Query 5028 GAGCTCGCTGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTA 5087 || |||||||| |||| ||| ||||||| ||| |||||||||| || || || || Sbjct 3376 CGGCGCGCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTA 3435 Query 5088 CGAGAACGGCAGCCACGCCGGCTTCATCCTGTACATGACCGACGCCGCGCAGAAGCAGGA 5147 ||||||| | ||||||||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 3436 TGAGAACGACTCGCACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGGA 3495 Query 5148 CGACGTGGAC 5157 ||||| ||| Sbjct 3496 AGACGTAGAC 3505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114140153881620