Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq61401 322 1e-83 >seq61401 Length=4951 Score = 322 bits (356), Expect = 1e-83 Identities = 561/825 (68%), Gaps = 13/825 (2%) Strand=Plus/Plus Query 3546 TTCCGCGAGCTGAACAAGGTCGCCTCCGGCATGGCGATGCA---CAAGCGCTGGCGCAAG 3602 || ||| | ||||||||||| || || |||||||||||||| |||| ||| | || Sbjct 1829 TTTCGCAAACTGAACAAGGTTGCATCGGGCATGGCGATGCATAGCAAG---TGGAGAAAA 1885 Query 3603 ACTTACTTCAGCACGCCGTCCAGCGTCACGCACGAGGCGTACGCGTTCTGGAGCGGCGCG 3662 || || ||| |||||| || ||| | ||| |||||||| | ||||||| ||||| Sbjct 1886 ACCTATTTCTCCACGCCATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGAC 1945 Query 3663 CACGCGAACCGCGGCCGCGCCGCGGGCGAGCGCATCCAGATCGACACGAGC-CACGAGGC 3721 || |||||||||||||| || ||| | | || | ||| ||| ||| |||| Sbjct 1946 CATTTCAACCGCGGCCGCGCTAAGGTCGATCATCTGCACCTGGACGT-AGCACACAAGGC 2004 Query 3722 GCTCGTGCGCGGCATGTTGTGCGAGGACGCGCAGTGGCGGCAGATCGTGACCGTGCTCGA 3781 ||||| |||||| | | |||||||| ||||||||| ||||||||||| || || Sbjct 2005 GCTCGCACGCGGCCGGCTTTGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAAGA 2064 Query 3782 TGCGATGGCGGGCGGCTGCGACCTGTTCGACATCGACGAGCTGCGCCGCGAGTACAGCGC 3841 ||| | || ||||| ||| |||||||||| | | ||||||| | | |||||||||| | Sbjct 2065 CGCGGTTGCAGGCGGTTGCAACCTGTTCGATCTTGCCGAGCTGGGGCTCGAGTACAGCCC 2124 Query 3842 CGAGGAATTCGCGAATCTGCTCATGTGCCAGTTCATCGACGATTCGCTGTCGGTGTTCAA 3901 |||||||| ||| ||| | ||||| || ||||| ||||| || ||| | ||| Sbjct 2125 CGAGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTCCC 2184 Query 3902 GCTGTCGGACCTGCAACGCTGCATGGTCGACTCGTGGGAAGAATGGGCGGACGACTTCTC 3961 ||| | ||| |||| ||||||||||| || |||||||| | | ||| |||||| Sbjct 2185 GCTCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACG---GGAAGACTTCAA 2241 Query 3962 GCNNNNNNNNNNNNNNNCGTTCGGCTATCGCGAGGTGTGGGTCGGCTACGATCCGGCGCT 4021 || | |||| || || || ||||| ||||| || || ||| | Sbjct 2242 GCCCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGACCCAGCGTT 2301 Query 4022 CACGGGCGACTCGGCGGGGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTT 4081 ||||||||||| || || || Sbjct 2302 ATACGGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAGTT 2361 Query 4082 CCGCGTGCTCGAACGTCATCAGTTCCGCGGCAACGACTTTGAGGAACAGGCCGCGGCAAT 4141 |||||||| | | || | ||||||| ||||| || | ||||||| ||||| Sbjct 2362 TCGCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGCAAT 2421 Query 4142 CGAGGCG-ATCACGCAGCGCTACAACGTCGGCTACATCGCGATCGACACCACGGGCATGG 4200 | ||||| ||||| ||| | |||||| | ||||| ||||||||||| || ||||| | Sbjct 2422 C-AGGCGCATCACACAGGATTTCAACGTGGAATACATGGCGATCGACACGACCGGCATCG 2480 Query 4201 GGCAAGGCGTCTACCAGCTCGTGCGCAAGTTCTTCCCGGCCGCCGTCGCGCTGAACTACT 4260 | || | |||||||||||||| ||| |||||| ||| ||| |||||||| ||||||| Sbjct 2481 GCCAGGATGTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTTAACTACT 2540 Query 4261 CGCCCGAGGTGAAAACCCGCCTCGTGCTCAAGGGCCAGTCCGTCGTCCGGAACGGCCGCC 4320 |||| ||||| ||| || ||||| ||||| |||| ||| || || | || ||||| | Sbjct 2541 CGCCAGAGGTCAAAGGGCGGCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAGGGCCGAC 2600 Query 4321 TGCAATTCGACGCGGGCTGGACCGATCTGGCGGCGGCGTTCATGG 4365 | ||||||| || || ||||| ||||| ||| | ||||||| Sbjct 2601 TCGAATTCGATGCCGGATGGACGGATCTCGCGCAATCCTTCATGG 2645 Score = 221 bits (244), Expect = 3e-53 Identities = 210/266 (79%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 5284 CGGGAAGAAGGACGGCATCCAGCTCATTCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTT 5343 ||| || ||||| || || ||||| || || |||||||||||| | |||||||||||||| Sbjct 3577 CGGTAAAAAGGAAGGAATTCAGCTAATCCCGGTGTCCGAGGTCACGGCGAAGGACGAGTT 3636 Query 5344 CTTCAACATCAAGAACGTGACGCGCGATGACCTGCTCGCCGCACACCGCGTGCCGCCGCA 5403 || |||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct 3637 TTTTAACATCAAGAACGTGACGCGAGACGACCTGCTCGCCGCACATCGCGTACCGCCGCA 3696 Query 5404 GTTGCTCGGCATCGTGCCGAGCAATTCGGGCGGGTTCGGCACGCCGGATACCGCTGCACG 5463 | ||||| | |||||||||||| | |||||||| || | | || || || || Sbjct 3697 ACTAATCGGCGTGGTGCCGAGCAATACAGGCGGGTTTGGGGCCGCAGACACGGCGGCCGA 3756 Query 5464 CGTGTTCGG-GCGCAACGAAATCAGGCCGCTACAGGCACGCTTCGCCGAGCTGAACGACT 5522 || ||||| ||| ||||||||| ||||||||| ||||| | |||| | || | Sbjct 3757 GGTATTCGGTGCG-AACGAAATCGAACCGCTACAGAGTCGCTTTACGCAGCTCGATGAGT 3815 Query 5523 GGCTCGGCGACGAGGTCGTGAGGTTC 5548 || ||||||||||||||||| ||||| Sbjct 3816 GGATCGGCGACGAGGTCGTGCGGTTC 3841 Score = 205 bits (226), Expect = 2e-48 Identities = 227/303 (75%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 18782 GCGAAAATGCGACCGGTGCCGATCGGTCGTCGGGTCATCCCGCATTTCGAGCTCGAGCGC 18841 ||||||||| || |||||| ||||| ||||| || || || | ||| | || || | Sbjct 1407 GCGAAAATGAGAGCGGTGCTTGTCGGTGGTCGGATCGTCGCGGACTTCCATTTCCAGAGA 1466 Query 18842 GGTCGTGAATCCAACGTCGCCGATCGTGTGCGTTGTCTTCTTCACGAGCCACGGCGTCTC 18901 ||| || | || | ||||||| ||||||||||| |||||||||||||||||| || || Sbjct 1467 GGTTGTCAGGCCCGCTTCGCCGAGCGTGTGCGTTGCCTTCTTCACGAGCCACGGTGTTTC 1526 Query 18902 GTCGATTTCCGGTTTGAAGCCTGATACGGTCACGGGCATCTCCGGGAACAGTTCGGCGCG 18961 || |||||||||||| ||||| | || | || |||| ||||||||| | || | ||| Sbjct 1527 GTTGATTTCCGGTTTTAAGCCGGCGACATTTACCGGCAGCTCCGGGAATACCTCAGGGCG 1586 Query 18962 GCCGCGCGCGAGCGTGTAGCTCATCGTCGCCTGGCTGCGCTGCATCCGCTTGAACTCCGC 19021 |||| ||||| | ||| | |||||||||||||||||| | || |||| | || Sbjct 1587 GCCGAGCGCGCGTTGGTAAGAAAATGTCGCCTGGCTGCGCTGCGTGCGTGCGAACGCGGC 1646 Query 19022 TTGCGCGGCCGCGCGCGCTTCCGCCTCCGTTGCGTAATCTTCCGGCAGCACCTTCACGTT 19081 | | || |||||||| ||||| | || || || || |||||||||| || || ||||| Sbjct 1647 TCGAGCTGCCGCGCGTGCTTCGTCTTCGGTCGCATAGTCTTCCGGCAAAACTTTAACGTT 1706 Query 19082 CTT 19084 ||| Sbjct 1707 CTT 1709 Score = 197 bits (218), Expect = 3e-46 Identities = 232/310 (75%), Gaps = 8/310 (3%) Strand=Plus/Plus Query 4907 GGCGGCACGCTGCGGCTCGAGCCCGCGCTCGCGAAGTACGTACGGCGCAAGGCGGATTT- 4965 ||||| ||||| |||| ||| |||| ||||| ||| | || ||| | | ||| | Sbjct 3200 GGCGGTACGCTCGCGCTCAAGCGGGCGCCGGCGAAATACATGCGCCGCGCGACCGATCTG 3259 Query 4966 CAGCGGCTTCGTGTACGTGAACGGCTGGCAGGAGCGGCACGAGTTCGCGCCCGACAGCGT 5025 ||||| |||| | | || |||||| ||||| |||| ||||||| || | |||| Sbjct 3260 CAGCG-CTTCTTTCAGGTCAACGGCATACAGGAAAGGCATGAGTTCGAACCGG---GCGT 3315 Query 5026 GTTCC---AGCTCGTGCGGCCGGACATCAATCAGGAGGTCTATGGCCTGCCCGAGTATCT 5082 | || | | || || || |||||||||||||| |||||||||||||| ||||| Sbjct 3316 GATCTTTAACTTAATGGAACCCGATATCAATCAGGAGGTGTATGGCCTGCCCGAATATCT 3375 Query 5083 GAGCTCGCTGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTA 5142 || |||||||| |||| ||| ||||||| ||| |||||||||| || || || || Sbjct 3376 CGGCGCGCTGCACGCGGCATGGTTGAACGAGTCGGCGACGCTGTTTCGTCGTCGCTACTA 3435 Query 5143 CGAGAACGGCAGCCACGCCGGCTTCATCCTGTACATGACCGACGCCGCGCAGAAACAGGA 5202 ||||||| | ||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 3436 TGAGAACGACTCGCACGCCGGCTTTATCCTGTACATGACGGACGCAGCGCAGAAACAGGA 3495 Query 5203 CGACGTGGAC 5212 ||||| ||| Sbjct 3496 AGACGTAGAC 3505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117174044760080