Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq61401 437 2e-118 >seq61401 Length=4951 Score = 437 bits (484), Expect = 2e-118 Identities = 408/513 (80%), Gaps = 4/513 (1%) Strand=Plus/Minus Query 2968 GAACCGCACCACCTCGTCACCGATCCAATCGTTGAT-TGCCAACAGGCGGTCCTGCAGGG 3026 ||||||||| |||||||| |||||||| || | || ||| | || || ||| || | Sbjct 3841 GAACCGCACGACCTCGTCGCCGATCCACTCATCGAGCTGCGTAAAG-CGACTCTGTAGCG 3783 Query 3027 GCTTCACCTCGTTGCGCGC-GAACACCATCGCCGCCTTCTCCACGTCGCCGAATCCGCCG 3085 | | | ||||| ||| | ||| ||| |||||| | || || | || || ||||| Sbjct 3782 GTTCGATTTCGTT-CGCACCGAATACCTCGGCCGCCGTGTCTGCGGCCCCAAACCCGCCT 3724 Query 3086 GTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTCG 3145 || ||| |||| | | ||| || || |||||||||||||| || ||||||||| ||||| Sbjct 3723 GTATTGCTCGGCACCACGCCGATTAGTTGCGGCGGTACGCGATGTGCGGCGAGCAGGTCG 3664 Query 3146 TCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGGT 3205 || ||||| |||||||||||||| | |||||||||||||| | |||||||||||||| Sbjct 3663 TCTCGCGTCACGTTCTTGATGTTAAAAAACTCGTCCTTCGCCGTGACCTCGGACACCGGG 3604 Query 3206 AGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATTG 3265 | | ||| || || ||||| || || || |||||||||||||||||||||||||| ||| Sbjct 3603 ATTAGCTGAATTCCTTCCTTTTTACCGTTCGGCGCGTACATGAACAGGTTGCGGAAGTTG 3544 Query 3266 CCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCCTGCTTCTGC 3325 ||||| |||||| | | |||| ||||||||||| || ||| ||||| ||||| |||||| Sbjct 3543 CCCGGTCCCTTGCTAATTTTCAGCGCCTCGCGCAACGCGTCTACGTCTTCCTGTTTCTGC 3484 Query 3326 GCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCGC 3385 || || || |||||||||||||| ||||||||||||||| |||||| ||||| || || Sbjct 3483 GCTGCGTCCGTCATGTACAGGATAAAGCCGGCGTGCGAGTCGTTCTCATAGTAGCGACGA 3424 Query 3386 CGGAACAGCGTGGCCGATTCGTTCAACCACGTGGCGTTCAGCGCGGACAGGTATTCCGGC 3445 || |||||||| ||||| ||||||||||| | |||| ||||||| || ||||| ||| Sbjct 3423 CGAAACAGCGTCGCCGACTCGTTCAACCATGCCGCGTGCAGCGCGCCGAGATATTCGGGC 3364 Query 3446 AGGCCGTACACCTCCTGATTGATGTCCGGTTCC 3478 ||||| ||||||||||||||||| || |||||| Sbjct 3363 AGGCCATACACCTCCTGATTGATATCGGGTTCC 3331 Score = 230 bits (254), Expect = 6e-56 Identities = 545/821 (66%), Gaps = 21/821 (3%) Strand=Plus/Minus Query 4173 CATGAACGACGCGGCGAAGTCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTGCTGAT 4232 |||||| || |||| |||||||| ||||| ||||| || || | |||||||| ||| Sbjct 2644 CATGAAGGATTGCGCGAGATCCGTCCATCCGGCATCGAATTCGAGTCGGCCCTTGCCGAT 2585 Query 4233 CAC-GTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACGTCCACGGAATAGGTGAAGC-CT 4290 ||| | | || | ||||| || || ||| || || || ||| | |||| | Sbjct 2584 CACCGACAGGC-CTTTGAGTACGAGCCGCCCTTTGACCTCTGGCGAGTAGTT-AAGCGCG 2527 Query 4291 TCGGCATCCGGACGGAACTTCTGCACCAGGCGGAACACCGCATCGCCGATGCCGGTCCGG 4350 | || | |||| ||||| | || || || | || | | ||||||||||||| | Sbjct 2526 ACCGCGTTCGGATAGAACTGGCGAACGAGCTGGTAGACATCCTGGCCGATGCCGGTCGTG 2467 Query 4351 TCGATGCCCACGTAGGCGACGTCGTAGCGCTCAGCGACGCGCCGGATGGCGCCGGCCTGT 4410 ||||| ||| ||| | |||| | | || | || ||||| ||| ||| ||||||| Sbjct 2466 TCGATCGCCATGTATTCCACGTTGAAATCCTGTGTGATGCGCCTGATTGCGTCGGCCTGG 2407 Query 4411 TCCTCGTAGTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAACTTGCCGCCCGGT 4470 | ||| |||| |||||||| | || | | | ||||||||| |||||||| || || Sbjct 2406 GCTTCGAAGTCCATGCCGCGCCATTGCTCCTTGTGCAGCACGCGAAACTTGCCACCGGGC 2347 Query 4471 ACCAGTGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGGTCG 4530 ||| || | ||||| Sbjct 2346 ACCGCCGGGGGCGCCACCACAATCAGGCCGGCCGAGTCGCCGTATAACGCT---GGGTCA 2290 Query 4531 TAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGTGGCGCGAACGGCCGGAAGTCTTCC 4590 ||||| ||||| || || |||| |||| || || ||||| | ||| |||||||||| Sbjct 2289 TAGCCCACCCATACAGGTCGGTATGCGAAAGGGCGGGGCGCCAGGGGCTTGAAGTCTTCC 2230 Query 4591 CATACCTCCCAACTGTCCACCATCCCGCGCATGAGCATCG-CGAGCGGAAACACCGACGC 4649 | || |||||| |||||||| | |||| || ||| ||||||| || | ||| || Sbjct 2229 CGTAGCTCCCACGAATCCACCATGCAGCGC-TGCAAGTCGGCGAGCGGGAAAATCGATGC 2171 Query 4650 GTTGTCGTCGATGAATACGCACATGAGCAGGTTGGCGAAAT----CGAGTTCGCTGTACT 4705 ||||||| ||||| ||||| | |||||| || || || | |||||||| Sbjct 2170 CGTGTCGTCAATGAAGTGACACATCAACAGGTTCA-GATATTCCTCGGG---GCTGTACT 2115 Query 4706 CCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAGCCGCCGCGGAGCGCATCCTCCACCG 4765 | || | ||||| | | || |||||||||||||| ||||| | ||| || || |||| Sbjct 2114 CGAGCCCCAGCTCGGCAAGATCGAACAGGTTGCAACCGCCTGCAACCGCGTCTTCGACCG 2055 Query 4766 TCACGATTTGGCGCCACTGGCCGTCCGCGCAGCGCATGCCGTC-GCGAAGCGCGGCGTG- 4823 ||||||| ||||||||||| | ||| |||| || |||| |||| |||| ||| Sbjct 2054 TCACGATCTGGCGCCACTGCCGATCCTCGCAAAGCCGGCCGCGTGCGA-GCGCCTTGTGT 1996 Query 4824 GCTCAGGTCGAGCTTGATCTGTTTGTCCTTGGCCTTGCCGCGGTTGAACAGTGCGCCGGA 4883 ||| | ||| || | | || | | |||| || |||||||||||| | |||||| Sbjct 1995 GCT-ACGTCCAGGTGCAGATGATCGACCTTAGCGCGGCCGCGGTTGAAATGGTCGCCGGT 1937 Query 4884 CCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTCTGACGCCA 4943 |||||| | ||| ||||||||| || ||| || ||||||||||| ||||| | | ||| Sbjct 1936 CCAGAATGAATACGCCTCATGCTGCATGCTCGATGGCGTGGAGAAATAGGTTTTTCTCCA 1877 Query 4944 GTGCTTGTGGATCGCCATGCCGGAGGCGACCTTGCGCAGTT 4984 | | || ||||||||||| || || |||||| ||||| Sbjct 1876 CTTGCTATGCATCGCCATGCCCGATGCAACCTTGTTCAGTT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123791699257880