Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2137 114 1e-20 seq25256 105 7e-18 >seq2137 Length=523945 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| |||||||| |||||| | || | || ||||||||| || || || || |||||| Sbjct 115853 TCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTT 115912 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| ||| | || |||| || ||||| || | || | | Sbjct 115913 TCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 115972 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| |||||||| ||||||||||| || |||||| Sbjct 115973 GTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 116008 >seq25256 Length=205224 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| ||||| || ||||||||||| | || ||||| | || Sbjct 45228 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 45169 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||||||||| || |||||||| || Sbjct 45168 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 45109 Query 64352 TGTATTTT 64359 || || || Sbjct 45108 TGGATCTT 45101 Score = 100 bits (110), Expect = 3e-16 Identities = 159/233 (68%), Gaps = 18/233 (8%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| ||||| || ||||||||||| | || ||||| | || Sbjct 40937 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 40878 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA--------------- 64336 || ||||||||||| ||| | ||||||| ||||||||||||||| Sbjct 40877 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGA 40818 Query 64337 ---ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCC 64393 || |||||||| || || || || ||| || ||| | ||||| | || ||| Sbjct 40817 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 40758 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | || | |||||||| || | || || ||||| || |||||||| Sbjct 40757 ACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTTT 40705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| ||||| || ||||||||||| | || ||||| | || Sbjct 45463 AGCACAAGGTGCAGGGTCGACTCTTTCTGTATGTTGTAATCAGAGAGTGTGCGGCCATCC 45404 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||||||||| ||| | ||||||| ||||||||||||||| Sbjct 45403 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGG 45360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499140970674800