Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq14347 172 8e-38 seq763 122 1e-22 >seq14347 Length=195022 Score = 172 bits (190), Expect = 8e-38 Identities = 212/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| || ||||| || ||||| | || || || | ||| Sbjct 104420 AAAGGACAGCCCTTCACATTCTTGCAGATGAGAGATTGAATTGAGGCAGTGTTGATGATT 104479 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || ||||||||| | || || || ||| Sbjct 104480 TTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACTCAGGAGAACATATGGGA 104539 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||| |||||| || || || || || | ||| ||||||| || Sbjct 104540 TTACCCATAAGTCCTTTCAGGGAAAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAA 104599 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || || || ||||| || | | | ||| || || || | || || | | Sbjct 104600 ATGGCATCTGGGCGAGGCTTTTCTACCAAAAGGGCAGGATACAGCTCCATGGCATCAATG 104659 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAAG 9180 || |||||||||||||| ||||| ||||| || |||||||| ||| |||| Sbjct 104660 TCACCATAGAGGGCTTCTAACTCCGCAGCCATTTCCTTCTCTCCTGCAAG 104709 Score = 134 bits (148), Expect = 2e-26 Identities = 138/178 (78%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCAT-ATCGGTCCTAA 10179 |||||||||||| |||| |||| | |||||||| ||||||||| | || ||| ||| | | Sbjct 107181 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGC-CTATGATCTGTCTTGA 107239 Query 10180 AAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGAT 10239 ||||||| ||||| ||||| || | || || || ||||||| || ||||||||||||| Sbjct 107240 AAAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGAT 107299 Query 10240 CGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 | ||||| || |||| | | || || ||| ||||| | || | ||||||| || || Sbjct 107300 CAGGGATGAACTTCCTTCTTAGAAGAAATTTTTCCACTAGCTCTTTTGAATCAGGAAG 107357 Score = 109 bits (120), Expect = 8e-19 Identities = 197/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| |||||||| || |||| | ||| || | | || Sbjct 105399 CCAGCAATTTGCCTGCTGAATGATTCAACAAACTGGGTGAGTCCATGTCCCAGTAATATA 105458 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| || || |||| || || | | |||| | || |||| ||| Sbjct 105459 GAGTTGTTGTAGACAAACTGTTGATAGTTGTATTCCTGGTCGTCAATTTGAAAGGTGTCA 105518 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| || | ||||||| ||||||| ||||| ||||| || || |||||||| |||||| Sbjct 105519 GGCAGAAGGGGATGCCAGTGGTAGAGTGTATTAAACTCAGCAGCAATTCGGTTTTGGTAC 105578 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 ||||| | ||| ||| || | ||| ||||| || | || | |||||| || || | Sbjct 105579 TGAAATTGTTGGT--TGAAAAGCAGCTCTGGGTCGAACTTCAGTTTGAAGTGATAGCCAC 105636 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || || ||||| | | || | ||| ||||| ||||| || Sbjct 105637 TCAAGTGTTGTACATAGTCTTCAATCACAATCTTAATAGTTTCTCC 105682 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||| || || ||||| |||| ||| ||| Sbjct 107790 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 107849 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| ||||| ||||| ||||||||||| ||||||||||| | | ||||| Sbjct 107850 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 107909 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || |||||||||| | || |||||| Sbjct 107910 GGTGGGCTGTCAATCAAATGTGATCTGGCT 107939 >seq763 Length=1082010 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || ||||| || ||||||||| Sbjct 938838 GTGGCAGTCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAGTAC 938779 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| ||||||||| |||| ||| ||| || || | |||||| || ||||| | || Sbjct 938778 TCCGGAGAGCAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATTTCT 938719 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | ||| |||| || | |||| | ||| Sbjct 938718 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGA-GAAGCAGCCCCGGGTA 938660 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | ||| || | ||| ||||| || | |||| || || || ||||||||||| Sbjct 938659 GAACTCCAAAGCATCAATGTCTCCATATAGCTCCTCCAGTTCAGCTGCCATCTCCTTCTC 938600 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 938599 TCCTACAAG 938591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722998210778000