Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14784 107 5e-18 seq26811 100 7e-16 seq25256 98.7 2e-15 seq2137 98.7 2e-15 seq15361 87.8 4e-12 seq353 87.8 4e-12 seq15362 84.2 5e-11 >seq14784 Length=15745 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | | ||||| | |||| ||||||||||| || ||| ||||||| Sbjct 8634 AGGACCAAGTGAAAGGGGGACTCTTCCTGGATGTTGTAGTCAGACAGAGTGTGTCCATCT 8693 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| || || || ||| || Sbjct 8694 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 8753 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | ||||| |||| ||||| ||| Sbjct 8754 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 8813 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || | || |||||||| || || Sbjct 8814 TTACTGGTCAAGGTCTTCACAAAGATCTG 8842 >seq26811 Length=67355 Score = 100 bits (110), Expect = 7e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||| |||| || ||||| |||||||||| | ||||||||| | |||||| | Sbjct 59322 AGTCTCAATGCAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAGTCGGACAAAGTATGT 59263 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||| |||||||||||| ||||| ||||| || | ||||| || ||| |||||||| Sbjct 59262 CCATTTTCCAGCTGCTTGCCGGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 59205 >seq25256 Length=205224 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/236 (68%), Gaps = 21/236 (9%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 40937 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 40878 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGAC------------------GCTGCTGGTCCGGA 199519 ||||||||||| || || |||||||| | ||||||||| ||| Sbjct 40877 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGNNNCTGCTGGTCGGGA 40818 Query 199520 AAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCT 199579 || |||||| ||||| ||||| ||||||| |||| ||| || | | || Sbjct 40817 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCC 40758 Query 199580 ACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || |||| ||||| ||||| || ||||| || ||||| || || || |||||| Sbjct 40757 ACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG---CATTTT 40705 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || |||||||| || |||| |||||| |||| | ||| | ||||| Sbjct 45228 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCC 45169 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || | ||||||||| ||| || |||||| ||| Sbjct 45168 TCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 45109 Query 199538 TGAATCTT 199545 || ||||| Sbjct 45108 TGGATCTT 45101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || |||||||| || || | |||||| |||| | || | ||||| Sbjct 45463 AGCACAAGGTGCAGGGTCGACTCTTTCTGTATGTTGTAATCAGAGAGTGTGCGGCCATCC 45404 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 ||||||||||| || || |||||||| | ||||||||| ||| Sbjct 45403 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGA 45362 >seq2137 Length=523945 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || |||||||| |||| ||||||||||| || ||| | ||||||| Sbjct 114420 AGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 114479 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| | | ||||||||| || || || || || Sbjct 114480 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 114539 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| ||| |||| |||||| Sbjct 114540 TGGATCTTGGCCTTGACGTTCTCGATGGTGTC 114571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || |||||||| |||| ||||||||||| || ||| | || || Sbjct 115491 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 115550 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 |||||||||||| ||||| ||||| | | ||||||||| || Sbjct 115551 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 115592 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| | || |||||||| |||| ||||||||||| || ||| | || ||| Sbjct 114795 AGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 114854 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| ||||| ||||| | | ||||||||| || Sbjct 114855 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGG 114895 >seq15361 Length=270988 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 || ||||||| | ||| || ||||| ||||||||||| ||| | ||||| |||||| Sbjct 65911 GATGTCTCAGTATAAGATGAAGAGTGGACTCCTTTTGAGTGTTCTTGTCAGACAAAGTAT 65970 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || ||||||||||||||| || || ||||| || | ||||| | ||| |||| || Sbjct 65971 GTCTATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATGAGGAGGAATTATTT 66030 Query 199530 CTCGCTCCTGAATCTT 199545 | ||||| ||||| Sbjct 66031 CCTTATCCTGGATCTT 66046 >seq353 Length=562904 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 || ||||| |||||||| ||| ||||||||||| | ||||||||||| |||||| | Sbjct 101324 AAATCTCAACACAAGGTGAAGAACAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 101383 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||| ||||| || | || || || ||||| || | | ||||||||| Sbjct 101384 GCCATCTTCCAGTTGCTTGCCAGTAAACAT--TACTCTGCTCATCAGTAGGAATTCCTTC 101441 Query 199531 TCGCTCCTGAATCTT 199545 ||||| ||||| Sbjct 101442 CTTATCCTGGATCTT 101456 >seq15362 Length=836705 Score = 84.2 bits (92), Expect = 5e-11 Identities = 102/139 (73%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||| | | ||| || | ||| ||||||||||| | ||||||||||| |||||| Sbjct 451505 AAGTCTGAATATAAGATGAAAAGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATG 451564 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCT----GCTGGTCCGGAAAAATTC 199526 |||||||||||||| || || || ||||| || | | ||| || ||| ||||| Sbjct 451565 TCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTCAGGAGGAATTC 451624 Query 199527 CTTCTCGCTCCTGAATCTT 199545 |||| |||||||||| Sbjct 451625 CTTCCTTAACCTGAATCTT 451643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177703085054890