Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq25256 102 8e-17 seq2137 82.4 8e-11 >seq25256 Length=205224 Score = 102 bits (112), Expect = 8e-17 Identities = 172/249 (69%), Gaps = 20/249 (8%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || ||||| ||||| || |||||| | || || ||| || Sbjct 40705 AAAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAGCCC 40764 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT---TCCCG- 38355 | ||| | | | | |||| | || | || |||| || ||||| || || ||||| Sbjct 40765 AGCGATACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGA 40823 Query 38356 --------------CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGA 38401 ||||||| ||| ||||||| | || ||||| |||||||| || | Sbjct 40824 CCAGCAGNNNCCTCCCGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGG 40883 Query 38402 GCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||||| ||| || ||||||||||| || || |||| ||||| | ||||| ||| | Sbjct 40884 CCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCT 40943 Query 38462 GAGAGGCGG 38470 ||| || || Sbjct 40944 GAGGGGTGG 40952 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || ||||| || || || ||||||| ||| |||| || | || ||||| Sbjct 45101 AAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTTATCTTTGCTGGCAAG 45160 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| ||| || ||||||||||| || || |||| ||||| Sbjct 45161 CAGCTGGAGGATGGCCGCACTCTCTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 45220 Query 38448 TTGGTGCTGCGTTTGAGAGG 38467 | ||||| ||| |||| || Sbjct 45221 CTCGTGCTCCGTCTGAGGGG 45240 >seq2137 Length=523945 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38343 GAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAG 38402 ||||| || ||| | ||||| ||| || | || | || || || |||||||| |||| Sbjct 115604 GAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGC 115545 Query 38403 CGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 ||||| || |||||||||||||| ||||| | || ||||| |||| |||||| | Sbjct 115544 CGCACTCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTC 115485 Query 38463 AGAGG 38467 ||||| Sbjct 115484 AGAGG 115480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499668438252800