Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq6471 154 6e-32 seq6800 105 3e-17 seq44690 98.7 4e-15 seq6744 89.7 2e-12 >seq6471 Length=258160 Score = 154 bits (170), Expect = 6e-32 Identities = 466/709 (66%), Gaps = 17/709 (2%) Strand=Plus/Plus Query 450905 AAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAA 450964 ||| || | || || || || || | || ||||||| ||||| || || || | |||| Sbjct 12338 AAAGAAATGGCTATAGGCATCGACATGGGTACCACCTACTCATGCGTGGGGGTGTTCCAA 12397 Query 450965 AATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTA 451024 || || || || || || || || |||||||| || || || || || || | || Sbjct 12398 AACGGCAAGGTGGAGATCATTGCCAATGACCAGGGCAACCGCACCACCCC--CA--GCTA 12453 Query 451025 AGT----TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATT 451079 || || || || | || | ||| | ||| |||| || || | | | |||| Sbjct 12454 CGTGGTGTTCACCGACACCGAGTGGCTTATCGGGAAAGCGGCCAAGAACCA-GGTAGCCA 12512 Query 451080 CAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATG 451139 ||| || | ||||| | | |||||| |||||| | || ||| | | | | ||||| Sbjct 12513 TGAATCCCCAGAACACTGCCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATC 12572 Query 451140 ATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGC 451199 | || ||| ||| | ||| | | ||| | | || | | | || ||| |||| Sbjct 12573 CTGTAGTTCAATCAGATATGAAACTTTGGCCTTTTCAAATAATCAGTGAAGGAGGCAAGC 12632 Query 451200 CCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCAT 451259 || | | | || |||||||| | | ||| |||| |||||| ||||| || | Sbjct 12633 CCAAGGTACTGGTGTCCTATAAAGGGAAGAAAAAAGCTTTCTATCCTGAGGAAATCTCTT 12692 Query 451260 CTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTC-TCCAGTTACT 451318 | ||||| || ||||||||||| || || || | | | | ||||| | || | || Sbjct 12693 CCATGGTACTGACTAAAATGAAGGAGACTGCTG-AGGCTTTTTTGGTCCACCCTATCACC 12751 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 |||| || || ||||| || || ||||||| ||| |||||| || |||||||| ||| Sbjct 12752 AATGCTGTGATCACTGTGCCAGCCTATTTCAGTGACTCACAACTACAGGCAACTAAGGAT 12811 Query 451379 GCAGGACAT-ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||||| ||| ||||| ||| | ||||| || ||||||| |||||||| ||||| ||||| Sbjct 12812 GCAGG-CATGATTGCGGGTCTCAATGTGCTAAGAATTATCAATGAACCCACAGCTGCTGC 12870 Query 451438 TCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGA 451497 | || ||||| ||| ||| | || | ||| | || | | | ||||| Sbjct 12871 CATTGCCTATGGCTTAGATAAAGC---AGGTTAGGGAGAGCGACATGTCCTGATCTTTGA 12927 Query 451498 TTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGT 451557 |||||||||| || |||| || | || | || || |||||| | ||||| || Sbjct 12928 CCTTGGTGGAGGCACATTTGATGTGTCCATCCTCACCATAGATGATGGGATTTTTGAGGT 12987 Query 451558 AAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 |||||| | ||| || || || || | || || || |||| ||| Sbjct 12988 AAAGGCCGCAGCTGGGGACACCCACCTGGTTGGAGAGGACTTTGACAAT 13036 >seq6800 Length=71777 Score = 105 bits (116), Expect = 3e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 54234 GTTACCCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCCCAACGCCAGGCAACC 54293 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || |||||| | | || || ||||| || Sbjct 54294 AAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATAATCAATGAGCC 54346 >seq44690 Length=446859 Score = 98.7 bits (108), Expect = 4e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | ||||| || |||||||||||||| | || || || ||||| Sbjct 423324 GTTACCAATGCTGTTGTCACTGTACCTGCTTATTTCAATGACTCTCAGCGTCAGGCAACC 423383 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||||| | ||||| || | || || ||||| || || || Sbjct 423384 AAAGATGCTGGAACTATTGCTGGTCTCAATGTACTCAGGATCATCAATGAGCCAACTGCT 423443 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 423444 GCTGCTATTGCTTATGG 423460 >seq6744 Length=160658 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || ||||| ||||| || || || |||| ||||||| ||||| | ||||||||| Sbjct 120084 CAGGCCACTAAGGATGCTGGCCAGATATCTGGACTAAATGTGCTTCGGGTGATTAATGAA 120025 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGA 451467 || ||||| |||||||| || ||||| |||| |||||| |||| Sbjct 120024 CCCACAGCTGCTGCTCTGGCCTATGGCCTAGACAAATCAGAAGA 119981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1973676328332360