Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq44690 113 3e-19 seq6800 91.5 1e-12 seq30395 89.7 4e-12 >seq44690 Length=446859 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| ||||||||||||||| ||||| || || || | ||| Sbjct 423472 TTTTTGTCTAAGCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATCCTGAGTACA 423413 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 423412 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTTGCCTGACGCTGAGAGTCATTGAAATAA 423353 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | ||| |||| Sbjct 423352 GCAGGTACAGTGACAACAGCAT 423331 Score = 107 bits (118), Expect = 1e-17 Identities = 359/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| |||||||| |||||||| || | | | ||| || | ||| |||||||| Sbjct 424120 GCACCATAAGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGCTCTTTTCCATTGAAG 424061 Query 517670 AAATTTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | ||||||| ||| | ||| || || || | || || || |||| ||||| Sbjct 424060 AAGTCCTGCAGAAGTT-TCTGAATCTTGGGGATTCGGGTAGAACCACCTACTAGGACAAT 424002 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || || || | |||| | |||| || ||||| || || Sbjct 424001 ATCATGGATCTGGGATTTGTCTAGCTTAGCATCCCGCAGGGCTTTCTCCACGGGATCCAG 423942 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 | | | || | ||| | | |||||||| || | || | |||| | | || Sbjct 423941 AGTGCCACGGAATAGGTCAGCATTGAGTTCTTCAAACCTGGCACGGGTAATGGAGGTATA 423882 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 ||||||||||||| | | || |||| ||||| | | || || ||||| || Sbjct 423881 GAAATCAATTCCTTCATAGAGTGAGTCAATCTCAATACTGGCCTGGGTACTGGAAGAGAG 423822 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 517964 | |||||||| || ||||| || || | || | || | || ||| | || | | Sbjct 423821 CGTGCGTTTAGCCCGCTCACAAGCAGTGCGGAGACGACGGACAGCCCTCTTGTTCTCACT 423762 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 518022 ||| || | |||| || | |||||| || ||| | ||| | || | || Sbjct 423761 GAT----GTCCTTCTTATGCTTGCGCTTGAACTCGGCAATGAA--ATGGTTGACCATTCG 423708 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||||||||| || || || | || | ||| | |||| | | || | || | Sbjct 423707 GTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTGACCTCAAAGAT 423648 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||||||||| || | | | |||||| || ||||| || | ||||| ||||| Sbjct 423647 TCCATCTTCAATAGTGAGGATGGACACATCAAAAGTGCCACCTCCTAAGTCAAAGATAAG 423588 Query 518143 TACATTCATTTC 518154 || ||| |||| Sbjct 423587 CACGTTCCTTTC 423576 >seq6800 Length=71777 Score = 91.5 bits (100), Expect = 1e-12 Identities = 209/309 (68%), Gaps = 22/309 (7%) Strand=Plus/Minus Query 517098 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTT--CTTGTTATCTGCTTCTTCAAA 517155 |||| ||||||||| | | ||||| || ||| || ||| || ||| | || |||| Sbjct 56400 TTTCCAATTCATTTCTGGTATCAAT-GC-GCTCCTTGAGCTTTTTGTCTTCCTCGGCAAA 56343 Query 517156 TTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT--- 517212 | | || || ||| ||| || ||||||| |||||| | || |||||| Sbjct 56342 CTTCTCGGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTTAGGCGATTTTG 56289 Query 517213 ---ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCAC 517266 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 56288 GTCATTGGTAATGGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCCGTCAC 56232 Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 |||||| ||||| |||| | ||||| ||||||||||| || || ||||| | | Sbjct 56231 GCGAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGAACCCCACGAGG 56172 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 |||||| || || || || || ||| ||||||||| | ||| ||||| |||| Sbjct 56171 AGCAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTCGTGAGGGG 56112 Query 517387 TCGTTCACC 517395 ||||||||| Sbjct 56111 TCGTTCACC 56103 >seq30395 Length=119991 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 366998 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 367057 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 50852 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 50793 Query 367058 ATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 367117 |||| ||||| ||| | || ||| || || || || ||||||||||| || ||||||| Sbjct 50792 ATGGTGCTCCTAAGGAAATGGAATCATACTACCAGGAGATTGGTAGAGCTGGCCGTGATG 50733 Query 367118 GA 367119 || Sbjct 50732 GA 50731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776819288873020