Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20javanica_20[refseq_20GCF_5F001685135.1_202016-07-14] 80,670 sequences; 2,547,395,906 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq61401 300 4e-77 >seq61401 Length=4951 Score = 300 bits (332), Expect = 4e-77 Identities = 366/499 (73%), Gaps = 0/499 (0%) Strand=Plus/Plus Query 34149 AACCAGGAGATTTACGGGCTGCCCGAATACCTGTCGGCGCTGAACTCGACCTGGTTGAAC 34208 || |||||| | || || ||||||||||| || |||||| || || | ||||||||| Sbjct 3344 AATCAGGAGGTGTATGGCCTGCCCGAATATCTCGGCGCGCTGCACGCGGCATGGTTGAAC 3403 Query 34209 GAGAGCGCGACGCTGTTTCGTCGGCGCTATTACAAGAACGGCAGCCATGCGGGCTTCATC 34268 ||| ||||||||||||||||| ||||| || |||||| | || || ||||| ||| Sbjct 3404 GAGTCGGCGACGCTGTTTCGTCGTCGCTACTATGAGAACGACTCGCACGCCGGCTTTATC 3463 Query 34269 CTGTACATGACCGACCCGGCCGACAAGCAGGAGGACGTCGACAACCTGCGCGCGGCGCTG 34328 ||||||||||| ||| | || | || ||||| ||||| ||| |||||| ||||||| Sbjct 3464 CTGTACATGACGGACGCAGCGCAGAAACAGGAAGACGTAGACGCGTTGCGCGAGGCGCTG 3523 Query 34329 AAGAACGCGAAGGGGCCGGGCAACTTCCGGAACCTGTTCATGTACGCGCCGAAGGGCAAG 34388 || | ||||| |||||||||||||| ||||||||||||||||||||||| || || Sbjct 3524 AAAATTAGCAAGGGACCGGGCAACTTCCGCAACCTGTTCATGTACGCGCCGAACGGTAAA 3583 Query 34389 AAGGACGGGATCCAGCTGCTGCCGATCGGCGAGGTGGCGGCGAAGGACGAGTTCTGGAAC 34448 ||||| || || ||||| | ||| | |||||| |||||||||||||||| | ||| Sbjct 3584 AAGGAAGGAATTCAGCTAATCCCGGTGTCCGAGGTCACGGCGAAGGACGAGTTTTTTAAC 3643 Query 34449 ATCAAGAAGGTGACGGTCGAGGATCAGCTCGCGGCGCACCGCGTGCCGCCGCAGTTGATG 34508 |||||||| |||||| || || | |||||| || || ||||| |||||||| | || Sbjct 3644 ATCAAGAACGTGACGCGAGACGACCTGCTCGCCGCACATCGCGTACCGCCGCAACTAATC 3703 Query 34509 GGGATCATCCCGTCGAACGCGGGCGGGTTCGGCGACGTGCACAAGGCCGCCGAGGTGTTC 34568 || | | ||| || | |||||||| || | || ||| ||| |||||||| ||| Sbjct 3704 GGCGTGGTGCCGAGCAATACAGGCGGGTTTGGGGCCGCAGACACGGCGGCCGAGGTATTC 3763 Query 34569 AACGAGCTCGAGATCGAGCCGCTGAAGGCGCGGCTGCGGGAGGTGAACGACTGGCTCGGG 34628 | | ||| ||||| ||||| || || | | || | | || ||| |||| Sbjct 3764 GGTGCGAACGAAATCGAACCGCTACAGAGTCGCTTTACGCAGCTCGATGAGTGGATCGGC 3823 Query 34629 ATCGAGGTGGTGCGCTTCA 34647 |||||| ||||| |||| Sbjct 3824 GACGAGGTCGTGCGGTTCA 3842 Score = 277 bits (306), Expect = 4e-70 Identities = 567/827 (69%), Gaps = 33/827 (4%) Strand=Plus/Plus Query 32637 CAAGGTCGCCTCCGGCATGGCGATTCACGACCAGTGGCGGCAGACGTATTTCTCGACGCC 32696 |||||| || || ||||||||||| || | ||||| | | || |||||||| ||||| Sbjct 1843 CAAGGTTGCATCGGGCATGGCGATGCATAGCAAGTGGAGAAAAACCTATTTCTCCACGCC 1902 Query 32697 GTCGAGCCTCGCGCACGACGCTTATCCGTTCTGGTCGGGCAAGCTGTTCAACCGTGGCCG 32756 |||||| | ||| || || ||| | |||||| | ||| | | |||||||| ||||| Sbjct 1903 ATCGAGCATGCAGCATGAGGCGTATTCATTCTGGACCGGCGACCATTTCAACCGCGGCCG 1962 Query 32757 ACCGAAAG---ATCAGCACGTATCGATCGACATTTCGCACGCGGCGCTGGC-CGCGGGCC 32812 | || | |||| | | | | | ||| | | ||| |||||| || ||||| | Sbjct 1963 CGCTAAGGTCGATCATCT-GCACC--TGGACGTAGCACACAAGGCGCTCGCACGCGGCCG 2019 Query 32813 GTTCGTGTCAGGACGGCCAGTGGCGCCAGATCGTCACGGTCGAGGACGCCGTGCGCGGCG 32872 | | || |||| | ||||||||||||||||| |||||||| ||||| || |||| Sbjct 2020 GCTT-TGCGAGGATCGGCAGTGGCGCCAGATCGTGACGGTCGAAGACGCGGTTGCAGGCG 2078 Query 32873 GTTGCAACAGCGGGGCGCGGCCGCTCTTCAATCTCGACCGGCTACGACTGGAATACAGCC 32932 |||||||| || ||| |||| | | ||| | || || ||||||| Sbjct 2079 GTTGCAAC---------------CTGTTCGATCTTGCCGAGCTGGGGCTCGAGTACAGCC 2123 Query 32933 CCGAGGAATACGCGAACCTGCTGCTGTGCCAGTTCATCGACGATTCGCTGTCGGTTTTCC 32992 |||||||||| ||||||| || |||| || ||||| ||||| || ||| |||||| Sbjct 2124 CCGAGGAATATCTGAACCTGTTGATGTGTCACTTCATTGACGACACGGCATCGATTTTCC 2183 Query 32993 CGCTGACGGTGTTGCAGCCGTGCATGGTCGATACCTGGGAGGTGTGGGACGACTTCAAGC 33052 |||| | | ||||||| |||||||| ||| | |||||| | |||| |||||||||| Sbjct 2184 CGCTCGCCGACTTGCAGCGCTGCATGGTGGATTCGTGGGAGCTACGGGAAGACTTCAAGC 2243 Query 33053 CACTGTACCTGCGCCCGTTCGGCGACGAGGAGGTCTGGATCGGCTACGACCCGTCG-CAT 33111 | ||| | ||||| |||| || || ||| | ||||| ||||| || || Sbjct 2244 CCCTGGCGCCCCGCCCTTTCGCATACCGACCTGTATGGGTGGGCTATGACCCAGCGTTAT 2303 Query 33112 ACGGGCGACAGCGCCGGCTGCGTGGTGATTGCGCCGCCGAAGCGTCCGGGCGGGAAGTTC 33171 || |||||| |||||| | ||| | ||||| ||| | || || || ||||| Sbjct 2304 AC-GGCGACTCGGCCGGCCTGATTGTGGTGGCGCCCCCGGCGGTGCCCGGTGGCAAGTTT 2362 Query 33172 CGCGTGCTCGAGCGGTTCCAGTGGCACGGTTTGGACTTCGAGGCGCAGGCCG-CGCAAAT 33230 |||||||| | | || |||| ||| |||||||||| || ||||||| ||| ||| Sbjct 2363 CGCGTGCTGCACAAGGAGCAATGGCGCGGCATGGACTTCGAAGCCCAGGCCGACGC-AAT 2421 Query 33231 CGAAGCGC-TGACGCGGCGCTATC-GCGTGACCTACATCGGCATTGACACGACCGGGATC 33288 | | |||| | || | | | | || |||| ||||| | || ||||||||||| ||| Sbjct 2422 C-AGGCGCATCACACAG-GATTTCAACGTGGAATACATGGCGATCGACACGACCGGCATC 2479 Query 33289 GGGCAGGGCGTGTATCAGCTCGTCACGAAGTTTTTCCCGGCCGCGACGCCGTTCCACTAC 33348 || |||| || || |||||||| |||| | ||| |||| || | ||||| Sbjct 2480 GGCCAGGATGTCTACCAGCTCGTTCGCCAGTTCTATCCGAACGCGGTCGCGCTTAACTAC 2539 Query 33349 TCGGTGGAAATC-AAGACCGCGCTGGTGATGAAGGCGCAGAACGTGATCCGCAAGGGTCG 33407 ||| || || ||| || ||| || | || | | | |||||| ||||||| || Sbjct 2540 TCGCCAGAGGTCAAAGGGCG-GCTCGTACTCAAAGGCCTGTCGGTGATCGGCAAGGGCCG 2598 Query 33408 GCTCGAGTTCGACGCCGGCTGGAACGATCTCGCCGCGTCATTCATGG 33454 ||||| ||||| ||||| |||| |||||||| || ||||||| Sbjct 2599 ACTCGAATTCGATGCCGGATGGACGGATCTCGCGCAATCCTTCATGG 2645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118919571018920